Factsheet for Bra035959.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16839	Canola	cytosol, nucleus, plastid	100.0	99.41
CDX87185	Canola	cytosol, nucleus, plastid	99.4	98.82
AT5G23090.1	Thale cress	cytosol, nucleus, plastid	89.29	94.34
Bra005976.1-P	Field mustard	cytosol, nucleus, plastid	78.57	86.27
Bra009328.1-P	Field mustard	cytosol, nucleus, plastid	83.93	84.94
KRH56716	Soybean	cytosol, mitochondrion, nucleus	77.98	83.44
KRH54787	Soybean	cytosol, mitochondrion, nucleus	77.38	83.33
KRH03842	Soybean	cytosol, mitochondrion, nucleus	79.17	83.12
GSMUA_Achr1P20700_001	Banana	cytosol	26.19	83.02
VIT_17s0000g04350.t01	Wine grape	cytosol, mitochondrion, nucleus	75.6	81.94
PGSC0003DMT400010436	Potato	cytosol, mitochondrion, nucleus	76.19	81.01
PGSC0003DMT400059368	Potato	cytosol	72.62	78.71
Solyc06g069310.2.1	Tomato	cytosol, mitochondrion, nucleus	61.31	78.63
PGSC0003DMT400063256	Potato	cytosol, nucleus, plastid	72.62	76.73
KRH62965	Soybean	cytosol, nucleus	48.81	76.64
Solyc03g114400.2.1	Tomato	cytosol, nucleus, plastid	57.74	73.48
GSMUA_Achr1P20710_001	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	48.81	69.49
GSMUA_Achr9P00790_001	Banana	cytosol, nucleus, peroxisome	68.45	66.47
Bra028668.1-P	Field mustard	nucleus	53.57	46.88
EES13767	Sorghum	nucleus	70.24	39.73
Zm00001d050242_P002	Maize	plastid	70.24	39.73
Zm00001d032328_P005	Maize	extracellular, plastid	70.83	39.53
TraesCS3A01G450700.1	Wheat	cytosol, mitochondrion, nucleus	68.45	39.52
TraesCS3B01G487800.1	Wheat	cytosol, mitochondrion, nucleus	68.45	38.85
TraesCS3D01G443500.1	Wheat	cytosol, mitochondrion, nucleus	68.45	38.59
HORVU3Hr1G097680.4	Barley	cytosol, mitochondrion, nucleus	66.07	36.16
Bra005074.1-P	Field mustard	nucleus	23.21	27.46
Bra018585.1-P	Field mustard	nucleus	19.05	24.24
Os08t0383700-02	Rice	cytosol, extracellular	33.93	22.98
Bra021147.1-P	Field mustard	nucleus	21.43	22.93
Bra022147.1-P	Field mustard	nucleus	24.4	22.04
Bra000462.1-P	Field mustard	nucleus	20.24	21.79
Bra027199.1-P	Field mustard	nucleus	22.02	21.76
Bra017473.1-P	Field mustard	nucleus	23.81	21.74
Bra017209.1-P	Field mustard	nucleus	24.4	21.47
Bra006991.1-P	Field mustard	nucleus	22.62	21.35
Bra004428.1-P	Field mustard	nucleus	19.64	21.29
Bra001615.1-P	Field mustard	nucleus	23.21	20.63
Bra023095.1-P	Field mustard	nucleus	23.21	19.5
Bra012301.1-P	Field mustard	nucleus	21.43	18.0
Bra017471.1-P	Field mustard	nucleus	22.02	17.7
Bra031356.1-P	Field mustard	nucleus	22.02	17.29
Bra013143.1-P	Field mustard	nucleus	21.43	17.22
Bra024924.1-P	Field mustard	nucleus	22.62	16.45
Bra037211.1-P	Field mustard	nucleus	20.24	16.35
Bra016397.1-P	Field mustard	cytosol	18.45	16.15

Protein Annotations

EnsemblPlants:Bra035959.1	EnsemblPlants:Bra035959.1-P	EnsemblPlantsGene:Bra035959	Gene3D:1.10.20.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982
InterPro:CBFA_NFYB_domain	InterPro:Histone-fold	InterPro:IPR009072	PANTHER:PTHR11064	PANTHER:PTHR11064:SF8	PFAM:PF00808
SEG:seg	SUPFAM:SSF47113	UniParc:UPI0002541FAA	UniProt:M4F4F9	MapMan:15.3.5.7.1.2	:

Description

AT5G23090 (E=3e-059) NF-YB13 | NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13); transcription factor

Coordinates

chrA09:-:2721286..2722152

Molecular Weight (calculated)

18920.2 Da

IEP (calculated)

4.455

GRAVY (calculated)

-0.739

Length

168 amino acids

Sequence
(BLAST)

001: MDPMDIVGKS KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLVSSESNE VCNKEDRRTI APEHVLKALQ VLGFGEYIEE VYAAYEQHKY
101: ETMDTQRSVK CNSGAQMTEE EAAAEQQRMF AEARARMNGG APVPQPQHPE TEHPESDHPE TDQRSLQS

Best Arabidopsis Sequence Match ( AT5G23090.4 )
(BLAST)

001: MDPMDIVGKS KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLVSSESND VCNKEDKRTI APEHVLKALQ VLGFGEYIEE VYAAYEQHKY
101: ETMDTQRSVK WNPGAQMTEE EAAAEQQRMF AEARARMNGG VSVPQPEHPE TDQRSPQS

Arabidopsis Description

DR1AT5G23090 protein [Source:UniProtKB/TrEMBL;Acc:B9DHA9]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.