Factsheet for Bra006991.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G53340.5	Thale cress	nucleus	84.83	85.8
CDX73560	Canola	nucleus	99.44	77.29
PGSC0003DMT400004366	Potato	nucleus	57.87	73.57
VIT_08s0040g03260.t01	Wine grape	nucleus	62.92	69.57
CDX78169	Canola	nucleus	100.0	69.26
Bra017209.1-P	Field mustard	nucleus	74.16	69.11
Bra023095.1-P	Field mustard	nucleus	76.4	68.0
Solyc09g007290.2.1	Tomato	nucleus	48.88	67.44
Bra005074.1-P	Field mustard	nucleus	53.37	66.9
KXG22176	Sorghum	nucleus	62.92	62.22
GSMUA_Achr8P17450_001	Banana	nucleus	66.85	61.34
TraesCS7A01G486400.1	Wheat	cytosol	36.52	61.32
Zm00001d038397_P005	Maize	nucleus	61.24	61.24
TraesCS7B01G501400.1	Wheat	cytoskeleton, cytosol, nucleus	38.76	60.53
Bra021147.1-P	Field mustard	nucleus	53.37	60.51
Os05t0463800-02	Rice	nucleus	62.36	60.0
Zm00001d010574_P001	Maize	nucleus	61.8	58.82
TraesCS1B01G297900.2	Wheat	nucleus	59.55	58.24
TraesCS1D01G287500.1	Wheat	nucleus	58.99	57.69
TraesCS1A01G288500.3	Wheat	nucleus	58.99	57.69
TraesCS5B01G454900.1	Wheat	cytoskeleton, cytosol, nucleus	38.76	56.56
Bra027199.1-P	Field mustard	nucleus	52.25	54.71
Bra017473.1-P	Field mustard	nucleus	54.49	52.72
Bra022147.1-P	Field mustard	nucleus	53.93	51.61
Bra001615.1-P	Field mustard	nucleus	51.69	48.68
Bra000462.1-P	Field mustard	nucleus	40.45	46.15
Bra018585.1-P	Field mustard	nucleus	33.15	44.7
Bra004428.1-P	Field mustard	nucleus	38.76	44.52
HORVU1Hr1G071620.5	Barley	nucleus, plastid	58.99	41.67
Bra013143.1-P	Field mustard	nucleus	47.75	40.67
Bra037211.1-P	Field mustard	nucleus	47.19	40.38
Bra017471.1-P	Field mustard	nucleus	40.45	34.45
Bra012301.1-P	Field mustard	nucleus	37.64	33.5
Bra024924.1-P	Field mustard	nucleus	41.57	32.03
Bra031356.1-P	Field mustard	nucleus	37.64	31.31
Bra016397.1-P	Field mustard	cytosol	30.34	28.12
Bra009328.1-P	Field mustard	cytosol, nucleus, plastid	22.47	24.1
Bra005976.1-P	Field mustard	cytosol, nucleus, plastid	19.66	22.88
Bra035959.1-P	Field mustard	cytosol, nucleus, plastid	21.35	22.62
Bra028668.1-P	Field mustard	nucleus	16.85	15.62

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.2	EnsemblPlantsGene:Bra006991	EnsemblPlants:Bra006991.1	EnsemblPlants:Bra006991.1-P	InterPro:CBFA_NFYB_domain
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019748	GO:GO:0019760	GO:GO:0043565
GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	UniProt:M4CRZ9	PFAM:PF00808	PRINTS:PR00615
ScanProsite:PS00685	PANTHER:PTHR11064	PANTHER:PTHR11064:SF85	SUPFAM:SSF47113	InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI0002542F22
SEG:seg	:	:	:	:	:

Description

AT3G53340 (E=3e-051) NF-YB10 | NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10); transcription factor

Coordinates

chrA09:-:26707011..26708157

Molecular Weight (calculated)

19324.6 Da

IEP (calculated)

7.415

GRAVY (calculated)

-0.857

Length

178 amino acids

Sequence
(BLAST)

001: MADSQAKSSG MSPGVGGGGS HESGGDQSPR SMNVREQDRF LPIANISRIM KRGLPANGKI AKDAKETMQE CVSEFISFVT SEASDKCQRE KRKTINGDDL
101: LWAMTTLGFE EYVEPLKFYL TRYREGDNKG SGKGGESSAK RDGQPGQFLQ QGQQGSFSQG PYGNAQGSHM MVQMPNAE

Best Arabidopsis Sequence Match ( AT3G53340.1 )
(BLAST)

001: MAESQTGGGG GGSHESGGDQ SPRSLNVREQ DRFLPIANIS RIMKRGLPLN GKIAKDAKET MQECVSEFIS FVTSEASDKC QREKRKTING DDLLWAMATL
101: GFEDYIDPLK VYLMRYREME GDTKGSGKGG ESSAKRDGQP SQVSQFSQVP QQGSFSQGPY GNSQGSNMMV QMPGTE

Arabidopsis Description

NFYB10Nuclear transcription factor Y subunit B-10 [Source:UniProtKB/Swiss-Prot;Acc:Q67XJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.