Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG22176 | Sorghum | nucleus | 91.89 | 94.44 |
| Zm00001d038397_P005 | Maize | nucleus | 88.11 | 91.57 |
| TraesCS1D01G287500.1 | Wheat | nucleus | 83.78 | 85.16 |
| TraesCS1B01G297900.2 | Wheat | nucleus | 83.24 | 84.62 |
| TraesCS1A01G288500.3 | Wheat | nucleus | 83.24 | 84.62 |
| VIT_06s0004g03490.t01 | Wine grape | nucleus | 60.54 | 84.21 |
| Zm00001d010574_P001 | Maize | nucleus | 84.86 | 83.96 |
| PGSC0003DMT400004366 | Potato | nucleus | 58.38 | 77.14 |
| Os01t0834400-02 | Rice | nucleus | 72.97 | 75.84 |
| Solyc04g009520.2.1 | Tomato | nucleus | 35.14 | 75.58 |
| KRH32395 | Soybean | nucleus | 63.24 | 73.12 |
| CDX74880 | Canola | nucleus | 55.68 | 72.54 |
| Bra005074.1-P | Field mustard | nucleus | 55.14 | 71.83 |
| VIT_08s0040g03260.t01 | Wine grape | nucleus | 61.62 | 70.81 |
| Solyc09g007290.2.1 | Tomato | nucleus | 49.19 | 70.54 |
| PGSC0003DMT400082465 | Potato | nucleus | 50.27 | 70.45 |
| VIT_13s0019g03600.t01 | Wine grape | nucleus | 65.41 | 68.75 |
| AT2G37060.2 | Thale cress | nucleus | 63.78 | 68.21 |
| GSMUA_Achr8P17450_001 | Banana | nucleus | 71.35 | 68.04 |
| Solyc04g049910.2.1 | Tomato | nucleus | 59.46 | 66.67 |
| AT3G53340.5 | Thale cress | nucleus | 60.0 | 63.07 |
| AT2G38880.8 | Thale cress | nucleus | 55.68 | 62.8 |
| Bra006991.1-P | Field mustard | nucleus | 60.0 | 62.36 |
| CDY18462 | Canola | nucleus | 58.92 | 62.29 |
| HORVU1Hr1G071620.5 | Barley | nucleus, plastid | 82.16 | 60.32 |
| CDY07691 | Canola | nucleus | 53.51 | 59.64 |
| Os05t0573500-01 | Rice | nucleus | 45.41 | 58.74 |
| Bra023095.1-P | Field mustard | nucleus | 62.7 | 58.0 |
| Bra017209.1-P | Field mustard | nucleus | 59.46 | 57.59 |
| CDY72254 | Canola | nucleus | 57.3 | 56.99 |
| CDY18460 | Canola | nucleus | 59.46 | 56.7 |
| CDY14422 | Canola | nucleus | 49.19 | 55.49 |
| CDX79714 | Canola | nucleus | 61.08 | 50.9 |
| CDX91501 | Canola | nucleus | 56.76 | 49.53 |
| CDX73560 | Canola | nucleus | 60.0 | 48.47 |
| Os03t0413000-01 | Rice | nucleus | 51.89 | 43.84 |
| CDY46752 | Canola | nucleus | 62.7 | 43.45 |
| CDX78169 | Canola | nucleus | 60.0 | 43.19 |
| Os07t0606600-01 | Rice | nucleus | 51.89 | 42.86 |
| Os01t0935200-01 | Rice | nucleus | 38.92 | 40.68 |
| Os02t0725700-01 | Rice | nucleus | 40.0 | 29.13 |
| Os08t0174500-01 | Rice | nucleus | 46.49 | 28.96 |
| Os06t0285200-01 | Rice | nucleus | 34.59 | 25.6 |
| Os02t0725900-01 | Rice | nucleus | 23.24 | 23.12 |
| Os08t0383700-02 | Rice | cytosol, extracellular | 8.11 | 6.05 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | EntrezGene:9268669 | ProteinID:AAU90178.1 | EMBL:AB095439 | EMBL:AK100811 |
| EMBL:AP014961 | EMBL:AY224530 | UniProt:B7EQX8 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 |
| EnsemblPlantsGene:Os05g0463800 | EnsemblPlants:Os05t0463800-02 | PFAM:PF00808 | PRINTS:PR00615 | ScanProsite:PS00685 | PANTHER:PTHR11064 |
| PANTHER:PTHR11064:SF37 | UniProt:Q60EQ4 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI000058E382 | RefSeq:XP_015639303.1 |
| RefSeq:XP_015639304.1 | RefSeq:XP_015639305.1 | SEG:seg | : | : | : |
Description
HAP3C SUBUNIT OF CCAAT-BOX BINDING COMPLEXSimilar to Nuclear transcription factor Y subunit B-3. (Os05t0463800-01);CCAAT-box binding transcription factor, Chloroplast biogenesis (Os05t0463800-02)
Coordinates
chr5:-:22770094..22774082
Molecular Weight (calculated)
19181.4 Da
IEP (calculated)
6.788
GRAVY (calculated)
-0.676
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MADGPGSPGG GGGSHESGSP RGGGGGGGGG GGGGGVREQD RFLPIANISR IMKKAIPANG KIAKDAKETV QECVSEFISF ITSEASDKCQ REKRKTINGD
101: DLLWAMATLG FEDYIEPLKV YLQKYREMEG DSKLTAKAGD GSVKKDVLGS HGGSSSSAQG MGQQAAYNQG MGYMQPQYHN GDVSN
101: DLLWAMATLG FEDYIEPLKV YLQKYREMEG DSKLTAKAGD GSVKKDVLGS HGGSSSSAQG MGQQAAYNQG MGYMQPQYHN GDVSN
001: MAESQAKSPG GCGSHESGGD QSPRSLHVRE QDRFLPIANI SRIMKRGLPA NGKIAKDAKE IVQECVSEFI SFVTSEASDK CQREKRKTIN GDDLLWAMAT
101: LGFEDYMEPL KVYLMRYREM EGDTKGSAKG GDPNAKKDGQ SSQNGQFSQL AHQGPYGNSQ AQQHMMVPMP GTD
101: LGFEDYMEPL KVYLMRYREM EGDTKGSAKG GDPNAKKDGQ SSQNGQFSQL AHQGPYGNSQ AQQHMMVPMP GTD
Arabidopsis Description
NFYB8Nuclear transcription factor Y subunit B-8 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.