Factsheet for Os05t0573500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G419500.1	Wheat	nucleus	77.62	81.62
TraesCS1B01G442000.1	Wheat	nucleus	76.92	80.88
TraesCS1A01G411700.1	Wheat	nucleus	76.22	80.15
Zm00001d009636_P001	Maize	nucleus	69.23	76.74
Zm00001d001775_P001	Maize	nucleus	48.25	75.82
HORVU7Hr1G119940.1	Barley	nucleus	64.34	71.32
HORVU5Hr1G004870.1	Barley	nucleus	57.34	70.69
OQU78466	Sorghum	nucleus	65.73	68.61
HORVU3Hr1G047250.1	Barley	nucleus	64.34	66.67
Zm00001d039957_P001	Maize	nucleus	61.54	63.77
GSMUA_Achr8P28050_001	Banana	nucleus	67.13	61.15
HORVU1Hr1G090450.9	Barley	nucleus	68.53	59.39
HORVU7Hr1G082430.1	Barley	nucleus	50.35	58.54
Os05t0463800-02	Rice	nucleus	58.74	45.41
Os01t0834400-02	Rice	nucleus	55.94	44.94
Os01t0935200-01	Rice	nucleus	48.95	39.55
Os03t0413000-01	Rice	nucleus	52.45	34.25
Os07t0606600-01	Rice	nucleus	53.15	33.93
Os08t0174500-01	Rice	nucleus	53.15	25.59
Os06t0285200-01	Rice	nucleus	43.36	24.8
Os02t0725900-01	Rice	nucleus	30.77	23.66
Os02t0725700-01	Rice	nucleus	41.96	23.62
Os08t0383700-02	Rice	cytosol, extracellular	5.59	3.23

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.2	EntrezGene:4339676	ProteinID:AAU44106.1	EMBL:AB095440	ProteinID:BAF18297.1
ProteinID:BAS95449.1	InterPro:CBFA_NFYB_domain	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	EnsemblPlantsGene:Os05g0573500	EnsemblPlants:Os05t0573500-01
PFAM:PF00808	PRINTS:PR00615	ScanProsite:PS00685	PANTHER:PTHR11064	PANTHER:PTHR11064:SF49	UniProt:Q65XK1
SUPFAM:SSF47113	InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI000019666A	RefSeq:XP_015638071.1	SEG:seg	:

Description

HAP3B SUBUNIT OF CCAAT-BOX BINDING COMPLEXCCAAT-box binding transcription factor, Chloroplast biogenesis (Os05t0573500-01)

Coordinates

chr5:+:28572426..28575154

Molecular Weight (calculated)

15531.3 Da

IEP (calculated)

4.638

GRAVY (calculated)

-0.586

Length

143 amino acids

Sequence
(BLAST)

001: MSEGFDGTEN GGGGGGGGVG KEQDRFLPIA NIGRIMRRAV PENGKIAKDS KESVQECVSE FISFITSEAS DKCLKEKRKT INGDDLIWSM GTLGFEDYVE
101: PLKLYLRLYR ETEGDTKGSR ASELPVKKDV VLNGDPGSSF EGM

Best Arabidopsis Sequence Match ( AT2G37060.2 )
(BLAST)

001: MAESQAKSPG GCGSHESGGD QSPRSLHVRE QDRFLPIANI SRIMKRGLPA NGKIAKDAKE IVQECVSEFI SFVTSEASDK CQREKRKTIN GDDLLWAMAT
101: LGFEDYMEPL KVYLMRYREM EGDTKGSAKG GDPNAKKDGQ SSQNGQFSQL AHQGPYGNSQ AQQHMMVPMP GTD

Arabidopsis Description

NFYB8Nuclear transcription factor Y subunit B-8 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.