Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G004870.1 | Barley | nucleus | 80.62 | 89.66 |
| HORVU3Hr1G047250.1 | Barley | nucleus | 91.47 | 85.51 |
| TraesCS1D01G419500.1 | Wheat | nucleus | 77.52 | 73.53 |
| TraesCS1B01G442000.1 | Wheat | nucleus | 76.74 | 72.79 |
| TraesCS1A01G411700.1 | Wheat | nucleus | 75.97 | 72.06 |
| HORVU1Hr1G090450.9 | Barley | nucleus | 83.72 | 65.45 |
| Os05t0573500-01 | Rice | nucleus | 71.32 | 64.34 |
| OQU78466 | Sorghum | nucleus | 68.22 | 64.23 |
| Zm00001d001775_P001 | Maize | nucleus | 44.96 | 63.74 |
| Zm00001d009636_P001 | Maize | nucleus | 62.79 | 62.79 |
| HORVU7Hr1G082430.1 | Barley | nucleus | 57.36 | 60.16 |
| Zm00001d039957_P001 | Maize | nucleus | 62.79 | 58.7 |
| GSMUA_Achr8P28050_001 | Banana | nucleus | 66.67 | 54.78 |
| HORVU7Hr1G105460.1 | Barley | nucleus | 51.16 | 38.15 |
| HORVU7Hr1G105500.6 | Barley | nucleus | 51.94 | 36.22 |
| HORVU3Hr1G098500.1 | Barley | nucleus | 48.84 | 34.43 |
| HORVU2Hr1G032320.1 | Barley | nucleus | 51.94 | 29.91 |
| HORVU3Hr1G098490.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 37.98 | 28.49 |
| HORVU1Hr1G071620.5 | Barley | nucleus, plastid | 55.04 | 28.17 |
| HORVU3Hr1G087390.1 | Barley | mitochondrion | 55.81 | 27.91 |
| HORVU2Hr1G087460.1 | Barley | nucleus | 51.94 | 26.91 |
| HORVU6Hr1G072110.1 | Barley | nucleus | 42.64 | 22.73 |
| HORVU6Hr1G072140.1 | Barley | cytosol | 24.03 | 19.02 |
| HORVU7Hr1G043520.1 | Barley | nucleus | 41.09 | 16.61 |
| HORVU3Hr1G097680.4 | Barley | cytosol, mitochondrion, nucleus | 20.16 | 8.47 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | UniProt:A0A287Y047 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046982 | EnsemblPlantsGene:HORVU7Hr1G119940 | EnsemblPlants:HORVU7Hr1G119940.1 | InterPro:Histone-fold |
| InterPro:IPR009072 | PFAM:PF00808 | PRINTS:PR00615 | ScanProsite:PS00685 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF49 |
| SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI000B47663B | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr7H:-:650664228..650664950
Molecular Weight (calculated)
14082.0 Da
IEP (calculated)
9.521
GRAVY (calculated)
-0.440
Length
129 amino acids
Sequence
(BLAST)
(BLAST)
001: ARAAMSEAVG TPESGGGGGV KEQERFLPIA NIGRIMQRGV PEKGKITKDP KESIQGCVSE FISFITSEAS DKCMKEKRKT INGDDLIWSM GTLGFEDYVQ
101: PLKLYLKLYR EKVKHMPSRA ASGNSVLAS
101: PLKLYLKLYR EKVKHMPSRA ASGNSVLAS
001: MADTPSSPAG DGGESGGSVR EQDRYLPIAN ISRIMKKALP PNGKIGKDAK DTVQECVSEF ISFITSEASD KCQKEKRKTV NGDDLLWAMA TLGFEDYLEP
101: LKIYLARYRE VCCFDSLIMC SEILNILVKR LVAVSNIEAC HDSSFTIPSI RLV
101: LKIYLARYRE VCCFDSLIMC SEILNILVKR LVAVSNIEAC HDSSFTIPSI RLV
Arabidopsis Description
NF-YB1Nuclear factor Y, subunit B1 [Source:UniProtKB/TrEMBL;Acc:F4ITZ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.