Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017209.1-P | Field mustard | nucleus | 98.45 | 100.0 |
| CDY72254 | Canola | nucleus | 93.3 | 97.31 |
| CDY18462 | Canola | nucleus | 83.51 | 92.57 |
| AT2G37060.2 | Thale cress | nucleus | 71.13 | 79.77 |
| PGSC0003DMT400004366 | Potato | nucleus | 53.09 | 73.57 |
| Solyc09g007290.2.1 | Tomato | nucleus | 46.91 | 70.54 |
| VIT_08s0040g03260.t01 | Wine grape | nucleus | 58.25 | 70.19 |
| CDX79714 | Canola | nucleus | 75.26 | 65.77 |
| CDX74880 | Canola | nucleus | 47.94 | 65.49 |
| Zm00001d038397_P005 | Maize | nucleus | 58.25 | 63.48 |
| GSMUA_Achr8P17450_001 | Banana | nucleus | 62.37 | 62.37 |
| TraesCS7A01G486400.1 | Wheat | cytosol | 34.02 | 62.26 |
| KXG22176 | Sorghum | nucleus | 57.73 | 62.22 |
| TraesCS7B01G501400.1 | Wheat | cytoskeleton, cytosol, nucleus | 36.08 | 61.4 |
| CDY21888 | Canola | nucleus | 48.45 | 59.87 |
| CDY20167 | Canola | nucleus | 48.45 | 59.49 |
| Os05t0463800-02 | Rice | nucleus | 56.7 | 59.46 |
| TraesCS5B01G454900.1 | Wheat | cytoskeleton, cytosol, nucleus | 36.6 | 58.2 |
| CDX73560 | Canola | nucleus | 68.56 | 58.08 |
| Zm00001d010574_P001 | Maize | nucleus | 55.67 | 57.75 |
| TraesCS1D01G287500.1 | Wheat | nucleus | 53.61 | 57.14 |
| TraesCS1A01G288500.3 | Wheat | nucleus | 53.61 | 57.14 |
| TraesCS1B01G297900.2 | Wheat | nucleus | 53.09 | 56.59 |
| CDY07691 | Canola | nucleus | 47.94 | 56.02 |
| CDY30123 | Canola | nucleus | 47.42 | 55.76 |
| CDY46752 | Canola | nucleus | 76.29 | 55.43 |
| CDY14422 | Canola | nucleus | 45.36 | 53.66 |
| CDY41061 | Canola | nucleus | 48.97 | 51.63 |
| CDX78169 | Canola | nucleus | 68.04 | 51.36 |
| CDY25955 | Canola | nucleus | 49.48 | 51.34 |
| CDX75855 | Canola | nucleus | 48.97 | 51.08 |
| CDY40552 | Canola | nucleus | 47.94 | 50.27 |
| CDX82424 | Canola | nucleus | 48.97 | 50.26 |
| CDY28916 | Canola | nucleus | 47.94 | 50.0 |
| CDX91501 | Canola | nucleus | 50.52 | 46.23 |
| CDY53021 | Canola | nucleus | 36.6 | 45.81 |
| CDX83320 | Canola | nucleus | 36.6 | 45.51 |
| CDX95014 | Canola | nucleus | 30.41 | 44.7 |
| CDX77785 | Canola | cytosol | 28.87 | 41.79 |
| HORVU1Hr1G071620.5 | Barley | nucleus, plastid | 53.61 | 41.27 |
| CDX80136 | Canola | nucleus | 36.08 | 40.7 |
| CDY37212 | Canola | nucleus | 42.27 | 39.42 |
| CDX89608 | Canola | nucleus | 42.27 | 39.23 |
| CDX93117 | Canola | nucleus | 42.27 | 39.23 |
| CDX81449 | Canola | nucleus | 40.72 | 37.98 |
| CDY25952 | Canola | nucleus | 39.69 | 37.2 |
| CDY41063 | Canola | nucleus | 39.69 | 36.84 |
| CDY17715 | Canola | nucleus | 39.18 | 32.9 |
| CDY00411 | Canola | nucleus | 34.54 | 29.13 |
| CDY01304 | Canola | nucleus | 34.54 | 29.0 |
| CDY16839 | Canola | cytosol, nucleus, plastid | 21.13 | 24.26 |
| CDX87185 | Canola | cytosol, nucleus, plastid | 21.13 | 24.26 |
| CDX69967 | Canola | cytosol, nucleus, plastid | 20.62 | 24.24 |
| CDY21520 | Canola | cytosol, nucleus, plastid | 20.62 | 24.1 |
| CDY68650 | Canola | nucleus | 34.02 | 22.0 |
| CDY38832 | Canola | nucleus | 25.77 | 21.83 |
| CDY30639 | Canola | nucleus | 35.05 | 19.88 |
| CDY44761 | Canola | cytosol | 20.1 | 16.25 |
| CDY40760 | Canola | nucleus | 19.59 | 15.32 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | GO:A0A078FVL2 | UniProt:A0A078FVL2 | InterPro:CBFA_NFYB_domain | EnsemblPlants:CDY18460 |
| ProteinID:CDY18460 | ProteinID:CDY18460.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| GO:GO:0046982 | EnsemblPlantsGene:GSBRNA2T00005462001 | InterPro:Histone-fold | InterPro:IPR009072 | PFAM:PF00808 | PRINTS:PR00615 |
| ScanProsite:PS00685 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF85 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI0004EDD089 |
Description
BnaA04g21270DBnaA04g21270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FVL2]
Coordinates
chrLK032085:-:640034..641504
Molecular Weight (calculated)
21356.0 Da
IEP (calculated)
8.087
GRAVY (calculated)
-0.634
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: MAESQTKSPG DHVSGGDQSP RSSSHVREQD RFLPIANISR IMKRGLPANG KIAKDAKEIL QECVSEFISF VTSEASDKCQ REKRKTINGD DLLWAMATLG
101: FEEYIEPLKL YLTRYREVCS GDSKGSARGG DIANAKRDGQ SSQNGQFSQL AHQGSYPQGP YGNSQVTFPL LLFHTHSEYV SATHLTTQII SSAK
101: FEEYIEPLKL YLTRYREVCS GDSKGSARGG DIANAKRDGQ SSQNGQFSQL AHQGSYPQGP YGNSQVTFPL LLFHTHSEYV SATHLTTQII SSAK
001: MAESQAKSPG GCGSHESGGD QSPRSLHVRE QDRFLPIANI SRIMKRGLPA NGKIAKDAKE IVQECVSEFI SFVTSEASDK CQREKRKTIN GDDLLWAMAT
101: LGFEDYMEPL KVYLMRYREM EGDTKGSAKG GDPNAKKDGQ SSQNGQFSQL AHQGPYGNSQ AQQHMMVPMP GTD
101: LGFEDYMEPL KVYLMRYREM EGDTKGSAKG GDPNAKKDGQ SSQNGQFSQL AHQGPYGNSQ AQQHMMVPMP GTD
Arabidopsis Description
NFYB8Nuclear transcription factor Y subunit B-8 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.