Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G09030.1 | CDX89016 | AT3G59220.1 | 17322342 |
| AT1G09030.1 | CDY00611 | AT3G59220.1 | 17322342 |
| AT1G09030.1 | CDY06016 | AT3G59220.1 | 17322342 |
| AT1G09030.1 | CDY57499 | AT3G59220.1 | 17322342 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018585.1-P | Field mustard | nucleus | 99.24 | 99.24 |
| AT1G09030.1 | Thale cress | nucleus | 88.64 | 84.17 |
| VIT_14s0060g02660.t01 | Wine grape | nucleus | 66.67 | 59.86 |
| KRH33913 | Soybean | nucleus | 60.61 | 56.74 |
| KRG92877 | Soybean | nucleus | 59.09 | 56.52 |
| Solyc01g099320.2.1 | Tomato | nucleus | 61.36 | 55.48 |
| PGSC0003DMT400063671 | Potato | nucleus | 57.58 | 55.07 |
| VIT_01s0010g01910.t01 | Wine grape | cytosol | 58.33 | 50.66 |
| VIT_01s0010g01940.t01 | Wine grape | cytosol | 56.82 | 49.34 |
| GSMUA_Achr8P21910_001 | Banana | cytosol | 40.91 | 45.76 |
| CDX83320 | Canola | nucleus | 53.79 | 45.51 |
| CDY21888 | Canola | nucleus | 52.27 | 43.95 |
| CDY53021 | Canola | nucleus | 51.52 | 43.87 |
| CDY20167 | Canola | nucleus | 52.27 | 43.67 |
| CDY30123 | Canola | nucleus | 52.27 | 41.82 |
| OQU88166 | Sorghum | cytosol, mitochondrion, nucleus | 46.21 | 41.78 |
| CDX74880 | Canola | nucleus | 44.7 | 41.55 |
| CDX80136 | Canola | nucleus | 52.27 | 40.12 |
| CDX75855 | Canola | nucleus | 53.79 | 38.17 |
| HORVU3Hr1G098490.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 49.24 | 37.79 |
| TraesCS3A01G457000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 49.24 | 37.79 |
| TraesCS3D01G450000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 49.24 | 37.79 |
| Zm00001d042197_P001 | Maize | plastid | 46.97 | 37.35 |
| CDX82424 | Canola | nucleus | 53.03 | 37.04 |
| CDY14422 | Canola | nucleus | 44.7 | 35.98 |
| CDY07691 | Canola | nucleus | 44.7 | 35.54 |
| CDY41061 | Canola | nucleus | 48.48 | 34.78 |
| CDY40552 | Canola | nucleus | 48.48 | 34.59 |
| CDY28916 | Canola | nucleus | 48.48 | 34.41 |
| CDY18462 | Canola | nucleus | 45.45 | 34.29 |
| CDY25955 | Canola | nucleus | 48.48 | 34.22 |
| CDX81449 | Canola | nucleus | 52.27 | 33.17 |
| CDY37212 | Canola | nucleus | 51.52 | 32.69 |
| CDX93117 | Canola | nucleus | 51.52 | 32.54 |
| CDX89608 | Canola | nucleus | 51.52 | 32.54 |
| CDY72254 | Canola | nucleus | 45.45 | 32.26 |
| CDY18460 | Canola | nucleus | 44.7 | 30.41 |
| CDX91501 | Canola | nucleus | 46.21 | 28.77 |
| CDX77785 | Canola | cytosol | 28.03 | 27.61 |
| CDY25952 | Canola | nucleus | 43.18 | 27.54 |
| CDX79714 | Canola | nucleus | 46.21 | 27.48 |
| CDY41063 | Canola | nucleus | 43.18 | 27.27 |
| CDX73560 | Canola | nucleus | 44.7 | 25.76 |
| CDY00411 | Canola | nucleus | 41.67 | 23.91 |
| CDY17715 | Canola | nucleus | 41.67 | 23.81 |
| CDY01304 | Canola | nucleus | 41.67 | 23.81 |
| CDY46752 | Canola | nucleus | 46.97 | 23.22 |
| CDX78169 | Canola | nucleus | 44.7 | 22.96 |
| CDX87185 | Canola | cytosol, nucleus, plastid | 24.24 | 18.93 |
| CDY16839 | Canola | cytosol, nucleus, plastid | 24.24 | 18.93 |
| CDX69967 | Canola | cytosol, nucleus, plastid | 23.48 | 18.79 |
| CDY21520 | Canola | cytosol, nucleus, plastid | 23.48 | 18.67 |
| CDY68650 | Canola | nucleus | 40.15 | 17.67 |
| CDY38832 | Canola | nucleus | 30.3 | 17.47 |
| CDY30639 | Canola | nucleus | 40.91 | 15.79 |
| CDY44761 | Canola | cytosol | 22.73 | 12.5 |
| CDY40760 | Canola | nucleus | 21.97 | 11.69 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | GO:A0A078E3C1 | InterPro:CBFA_NFYB_domain | EnsemblPlants:CDX95014 | ProteinID:CDX95014 |
| ProteinID:CDX95014.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| GO:GO:0046982 | EnsemblPlantsGene:GSBRNA2T00100529001 | InterPro:Histone-fold | InterPro:IPR009072 | PFAM:PF00808 | PRINTS:PR00615 |
| ScanProsite:PS00685 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF88 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI0004EC58FF |
| SEG:seg | : | : | : | : | : |
Description
BnaC05g06570DNuclear transcription factor Y subunit B-4 [Source:Projected from Arabidopsis thaliana (AT1G09030) UniProtKB/Swiss-Prot;Acc:O04027]
Coordinates
chrLK031886:+:691914..692312
Molecular Weight (calculated)
14858.2 Da
IEP (calculated)
6.524
GRAVY (calculated)
-0.831
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MADEDRLLPI ANVGRLMKQI LPSNAKISKE AKQTVQECAT EFISFVTCEA SDKCHRENRK TVNGDDIWWA LSTLGLDNYA DAVGRYLHKY REAERERAEN
101: NKSSNDSGNE RELNITSGYS RVLEKGSSSS AR
101: NKSSNDSGNE RELNITSGYS RVLEKGSSSS AR
001: MTDEDRLLPI ANVGRLMKQI LPSNAKISKE AKQTVQECAT EFISFVTCEA SEKCHRENRK TVNGDDIWWA LSTLGLDNYA DAVGRHLHKY REAERERTEH
101: NKGSNDSGNE KETNTRSDVQ NQSTKFIRVV EKGSSSSAR
101: NKGSNDSGNE KETNTRSDVQ NQSTKFIRVV EKGSSSSAR
Arabidopsis Description
NFYB4Nuclear transcription factor Y subunit B-4 [Source:UniProtKB/Swiss-Prot;Acc:O04027]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.