Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G09030.1 | KRH01821 | AT3G59220.1 | 17322342 |
| AT1G09030.1 | KRH46866 | AT3G59220.1 | 17322342 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH33913 | Soybean | nucleus | 91.3 | 89.36 |
| KRH50875 | Soybean | nucleus | 53.62 | 61.16 |
| KRH02238 | Soybean | nucleus | 52.9 | 59.35 |
| Bra018585.1-P | Field mustard | nucleus | 56.52 | 59.09 |
| CDX95014 | Canola | nucleus | 56.52 | 59.09 |
| KRH37126 | Soybean | nucleus | 50.0 | 58.97 |
| VIT_14s0060g02660.t01 | Wine grape | nucleus | 62.32 | 58.5 |
| PGSC0003DMT400063671 | Potato | nucleus | 56.52 | 56.52 |
| AT1G09030.1 | Thale cress | nucleus | 55.8 | 55.4 |
| KRH57816 | Soybean | cytosol | 30.43 | 53.85 |
| KRH71548 | Soybean | nucleus | 57.25 | 53.74 |
| Solyc01g099320.2.1 | Tomato | nucleus | 56.52 | 53.42 |
| KRH31905 | Soybean | cytosol, mitochondrion, nucleus | 55.07 | 52.41 |
| KRH12126 | Soybean | nucleus | 52.9 | 50.69 |
| KRH66225 | Soybean | cytosol | 36.23 | 46.3 |
| KRG88870 | Soybean | cytosol | 34.78 | 44.44 |
| GSMUA_Achr8P21910_001 | Banana | cytosol | 36.23 | 42.37 |
| OQU88166 | Sorghum | cytosol, mitochondrion, nucleus | 42.75 | 40.41 |
| TraesCS3A01G457000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 46.38 | 37.21 |
| KRH11589 | Soybean | nucleus | 45.65 | 36.84 |
| TraesCS3D01G450000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 45.65 | 36.63 |
| HORVU3Hr1G098490.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 45.65 | 36.63 |
| KRH73908 | Soybean | nucleus | 43.48 | 36.36 |
| KRH17618 | Soybean | plastid | 29.71 | 36.28 |
| Zm00001d042197_P001 | Maize | plastid | 42.75 | 35.54 |
| KRH36605 | Soybean | nucleus | 44.93 | 35.03 |
| KRH32395 | Soybean | nucleus | 40.58 | 35.0 |
| KRG95922 | Soybean | nucleus | 40.58 | 34.36 |
| KRG92229 | Soybean | nucleus | 42.75 | 34.1 |
| KRG98494 | Soybean | nucleus | 45.65 | 33.51 |
| KRH34567 | Soybean | nucleus | 42.03 | 33.33 |
| KRH46369 | Soybean | nucleus | 45.65 | 32.98 |
| KRH67637 | Soybean | nucleus | 39.86 | 32.16 |
| KRG89094 | Soybean | cytosol | 37.68 | 30.95 |
| KRH66068 | Soybean | nucleus | 38.41 | 30.46 |
| KRH59594 | Soybean | nucleus | 45.65 | 30.43 |
| KRH40945 | Soybean | nucleus | 45.65 | 28.51 |
| KRH59435 | Soybean | nucleus | 44.93 | 27.56 |
| KRH43304 | Soybean | nucleus | 45.65 | 26.69 |
| KRH51197 | Soybean | nucleus | 39.13 | 24.22 |
| KRH01950 | Soybean | nucleus | 39.13 | 23.89 |
| KRH54787 | Soybean | cytosol, mitochondrion, nucleus | 23.91 | 21.15 |
| KRH56716 | Soybean | cytosol, mitochondrion, nucleus | 22.46 | 19.75 |
| KRH03842 | Soybean | cytosol, mitochondrion, nucleus | 22.46 | 19.38 |
| KRH70381 | Soybean | cytosol | 28.99 | 17.7 |
| KRH62965 | Soybean | cytosol, nucleus | 13.04 | 16.82 |
| KRH49798 | Soybean | cytosol, golgi, nucleus | 26.09 | 15.58 |
Protein Annotations
| Gene3D:1.10.20.10 | EntrezGene:100791116 | MapMan:15.5.51.2 | EMBL:ACUP02012769 | InterPro:CBFA_NFYB_domain | EnsemblPlantsGene:GLYMA_20G234900 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046982 | InterPro:Histone-fold |
| InterPro:IPR009072 | UniProt:K7N593 | EnsemblPlants:KRG92877 | ProteinID:KRG92877 | ProteinID:KRG92877.1 | PFAM:PF00808 |
| PRINTS:PR00615 | ScanProsite:PS00685 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF83 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS |
| UniParc:UPI000233DDFE | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr20:-:46748301..46748717
Molecular Weight (calculated)
15605.5 Da
IEP (calculated)
8.062
GRAVY (calculated)
-0.806
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQDVQDRAL PIANVGRIMK QILPPSAKIS KEGKQLMQEC VTEFISFVTG EASDKCHKEN RKTVNGDDIC WALSSLGFDN YAEAIGRYLH IYRQGEREKI
101: NHTKKYENPQ NQTQINRAPP PPLLLSRVEN PPPTNQSG
101: NHTKKYENPQ NQTQINRAPP PPLLLSRVEN PPPTNQSG
001: MTDEDRLLPI ANVGRLMKQI LPSNAKISKE AKQTVQECAT EFISFVTCEA SEKCHRENRK TVNGDDIWWA LSTLGLDNYA DAVGRHLHKY REAERERTEH
101: NKGSNDSGNE KETNTRSDVQ NQSTKFIRVV EKGSSSSAR
101: NKGSNDSGNE KETNTRSDVQ NQSTKFIRVV EKGSSSSAR
Arabidopsis Description
NFYB4Nuclear transcription factor Y subunit B-4 [Source:UniProtKB/Swiss-Prot;Acc:O04027]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.