Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G21970.1 | CDX69494 | AT5G15840.1 | 17138697 |
| AT1G21970.1 | CDY26469 | AT5G15840.1 | 17138697 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031356.1-P | Field mustard | nucleus | 61.99 | 99.07 |
| CDY01304 | Canola | nucleus | 57.31 | 84.85 |
| CDY00411 | Canola | nucleus | 57.02 | 84.78 |
| CDY68650 | Canola | nucleus | 73.98 | 84.33 |
| AT1G21970.1 | Thale cress | nucleus | 51.46 | 73.95 |
| KRG89094 | Soybean | cytosol | 26.61 | 54.17 |
| KRH66068 | Soybean | nucleus | 27.19 | 53.45 |
| CDY41063 | Canola | nucleus | 30.41 | 49.76 |
| CDY25952 | Canola | nucleus | 30.12 | 49.76 |
| CDX74880 | Canola | nucleus | 19.01 | 45.77 |
| CDY17715 | Canola | nucleus | 30.7 | 45.45 |
| CDY20167 | Canola | nucleus | 20.47 | 44.3 |
| CDY21888 | Canola | nucleus | 20.18 | 43.95 |
| CDY30123 | Canola | nucleus | 20.47 | 42.42 |
| CDX83320 | Canola | nucleus | 19.3 | 42.31 |
| TraesCS6D01G268000.1 | Wheat | nucleus | 30.41 | 42.28 |
| TraesCS6A01G287300.1 | Wheat | nucleus | 30.41 | 42.28 |
| TraesCS6B01G316600.1 | Wheat | nucleus | 30.41 | 42.28 |
| HORVU6Hr1G072110.1 | Barley | nucleus | 29.82 | 42.15 |
| Os02t0725700-01 | Rice | nucleus | 30.41 | 40.94 |
| CDX95014 | Canola | nucleus | 15.79 | 40.91 |
| Zm00001d051697_P001 | Maize | nucleus | 31.29 | 40.53 |
| CDY53021 | Canola | nucleus | 18.13 | 40.0 |
| CDY40552 | Canola | nucleus | 21.64 | 40.0 |
| CDY28916 | Canola | nucleus | 21.64 | 39.78 |
| Zm00001d017898_P001 | Maize | nucleus | 31.87 | 39.21 |
| CDY41061 | Canola | nucleus | 20.76 | 38.59 |
| CDY07691 | Canola | nucleus | 18.71 | 38.55 |
| CDY25955 | Canola | nucleus | 21.05 | 38.5 |
| KXG30848 | Sorghum | nucleus | 30.99 | 38.41 |
| CDY18462 | Canola | nucleus | 19.59 | 38.29 |
| CDX75855 | Canola | nucleus | 20.76 | 38.17 |
| CDY14422 | Canola | nucleus | 18.13 | 37.8 |
| CDX82424 | Canola | nucleus | 20.76 | 37.57 |
| CDY38832 | Canola | nucleus | 24.85 | 37.12 |
| CDX80136 | Canola | nucleus | 18.42 | 36.63 |
| CDY72254 | Canola | nucleus | 19.3 | 35.48 |
| CDY18460 | Canola | nucleus | 19.88 | 35.05 |
| CDX89608 | Canola | nucleus | 20.76 | 33.97 |
| CDX93117 | Canola | nucleus | 20.76 | 33.97 |
| CDY37212 | Canola | nucleus | 20.18 | 33.17 |
| CDX81449 | Canola | nucleus | 19.88 | 32.69 |
| CDX91501 | Canola | nucleus | 19.88 | 32.08 |
| CDX73560 | Canola | nucleus | 20.47 | 30.57 |
| CDX79714 | Canola | nucleus | 19.59 | 30.18 |
| CDX77785 | Canola | cytosol | 11.4 | 29.1 |
| CDX78169 | Canola | nucleus | 20.47 | 27.24 |
| CDY46752 | Canola | nucleus | 19.88 | 25.47 |
| CDX87185 | Canola | cytosol, nucleus, plastid | 11.4 | 23.08 |
| CDY16839 | Canola | cytosol, nucleus, plastid | 11.4 | 23.08 |
| CDY21520 | Canola | cytosol, nucleus, plastid | 10.82 | 22.29 |
| CDX69967 | Canola | cytosol, nucleus, plastid | 10.53 | 21.82 |
| CDY44761 | Canola | cytosol | 10.23 | 14.58 |
| CDY40760 | Canola | nucleus | 9.94 | 13.71 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | GO:A0A078GZQ0 | UniProt:A0A078GZQ0 | InterPro:CBFA_NFYB_domain | EnsemblPlants:CDY30639 |
| ProteinID:CDY30639 | ProteinID:CDY30639.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| GO:GO:0046982 | EnsemblPlantsGene:GSBRNA2T00045935001 | InterPro:Histone-fold | InterPro:IPR009072 | PFAM:PF00808 | PRINTS:PR00615 |
| ScanProsite:PS00685 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF79 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI0004EE1A71 |
| SEG:seg | : | : | : | : | : |
Description
BnaAnng04140DBnaAnng04140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GZQ0]
Coordinates
chrLK032256:-:435020..439206
Molecular Weight (calculated)
37736.9 Da
IEP (calculated)
5.443
GRAVY (calculated)
-0.391
Length
342 amino acids
Sequence
(BLAST)
(BLAST)
001: MERGVPLSHY QLPNSNSGLN MDHQDNSIPA ATGNLIACDD KNKSIVQKQQ PCMAREQDQY MPIANVIRIM RRTLPPHAKI SDDAKETIQE CVSEYISFVT
101: GEANERCQRE QRKTITAEDI LWAMSKLGFD DYVGPLNLFI NRYREFETDR GCSLRGESSS FKPAFGGNGF GFHGPPQGPP HPGRYGYGTL DQSMVMGGGR
201: YYQNGSGEDG SGGGGGSSPS MNGMPVFDQY DSIPMEERQE LRRLIPRQLV ATVLGLYTIY NEGESGFDLS PDPNTARGGV SLACASGSNT LARMFFMMVI
301: FRITVTPVVL EQLRRTRESC DVNLVLGSIL LLISLDFSAC LR
101: GEANERCQRE QRKTITAEDI LWAMSKLGFD DYVGPLNLFI NRYREFETDR GCSLRGESSS FKPAFGGNGF GFHGPPQGPP HPGRYGYGTL DQSMVMGGGR
201: YYQNGSGEDG SGGGGGSSPS MNGMPVFDQY DSIPMEERQE LRRLIPRQLV ATVLGLYTIY NEGESGFDLS PDPNTARGGV SLACASGSNT LARMFFMMVI
301: FRITVTPVVL EQLRRTRESC DVNLVLGSIL LLISLDFSAC LR
001: MERGAPFSHY QLPKSISELN LDQHSNNPTP MTSSVVVAGA GDKNNGIVVQ QQPPCVAREQ DQYMPIANVI RIMRKTLPSH AKISDDAKET IQECVSEYIS
101: FVTGEANERC QREQRKTITA EDILWAMSKL GFDNYVDPLT VFINRYREIE TDRGSALRGE PPSLRQTYGG NGIGFHGPSH GLPPPGPYGY GMLDQSMVMG
201: GGRYYQNGSS GQDESSVGGG SSSSINGMPA FDHYGQYK
101: FVTGEANERC QREQRKTITA EDILWAMSKL GFDNYVDPLT VFINRYREIE TDRGSALRGE PPSLRQTYGG NGIGFHGPSH GLPPPGPYGY GMLDQSMVMG
201: GGRYYQNGSS GQDESSVGGG SSSSINGMPA FDHYGQYK
Arabidopsis Description
NFYB9Nuclear transcription factor Y subunit B-9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFD8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.