CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40552	Canola	nucleus	57.46	41.62
CDY28916	Canola	nucleus	57.46	41.4
CDY41061	Canola	nucleus	56.72	41.3
CDY25955	Canola	nucleus	56.72	40.64
Zm00001d030151_P001	Maize	mitochondrion	24.63	40.24
CDY21888	Canola	nucleus	45.52	38.85
CDY20167	Canola	nucleus	45.52	38.61
CDY30123	Canola	nucleus	44.78	36.36
CDX74880	Canola	nucleus	38.06	35.92
CDX75855	Canola	nucleus	44.78	32.26
CDY18462	Canola	nucleus	41.79	32.0
CDX82424	Canola	nucleus	44.78	31.75
CDY72254	Canola	nucleus	41.04	29.57
CDY07691	Canola	nucleus	36.57	29.52
CDY18460	Canola	nucleus	41.79	28.87
CDX95014	Canola	nucleus	27.61	28.03
CDX83320	Canola	nucleus	32.09	27.56
CDY14422	Canola	nucleus	33.58	27.44
CDY53021	Canola	nucleus	31.34	27.1
CDX73560	Canola	nucleus	46.27	27.07
CDX91501	Canola	nucleus	39.55	25.0
CDX79714	Canola	nucleus	41.04	24.77
CDX80136	Canola	nucleus	31.34	24.42
CDX78169	Canola	nucleus	46.27	24.12
CDX93117	Canola	nucleus	37.31	23.92
CDX89608	Canola	nucleus	37.31	23.92
CDY37212	Canola	nucleus	36.57	23.56
CDX81449	Canola	nucleus	35.82	23.08
CDY46752	Canola	nucleus	42.54	21.35
CDY25952	Canola	nucleus	29.85	19.32
CDY41063	Canola	nucleus	29.85	19.14
CDY00411	Canola	nucleus	30.6	17.83
CDY01304	Canola	nucleus	30.6	17.75
CDY38832	Canola	nucleus	29.1	17.03
CDY17715	Canola	nucleus	29.1	16.88
CDX69967	Canola	cytosol, nucleus, plastid	17.16	13.94
CDY21520	Canola	cytosol, nucleus, plastid	17.16	13.86
CDX87185	Canola	cytosol, nucleus, plastid	17.16	13.61
CDY16839	Canola	cytosol, nucleus, plastid	17.16	13.61
CDY68650	Canola	nucleus	27.61	12.33
CDY30639	Canola	nucleus	29.1	11.4
CDY44761	Canola	cytosol	16.42	9.17
CDY40760	Canola	nucleus	15.67	8.47

Protein Annotations

EnsemblPlants:CDX77785	EnsemblPlantsGene:GSBRNA2T00128824001	Gene3D:1.10.20.10	GO:A0A078CLJ6	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046982	InterPro:CBFA_NFYB_domain	InterPro:Histone-fold	InterPro:IPR009072	PANTHER:PTHR11064
PANTHER:PTHR11064:SF87	PFAM:PF00808	PRINTS:PR00615	ProteinID:CDX77785	ProteinID:CDX77785.1	SEG:seg
SUPFAM:SSF47113	UniParc:UPI0004EDE3A0	MapMan:35.1	:	:	:

Description

BnaC07g20390D

Coordinates

chrLK031812:+:1777524..1778032

Molecular Weight (calculated)

14621.1 Da

IEP (calculated)

4.548

GRAVY (calculated)

-0.640

Length

134 amino acids

Sequence
(BLAST)

001: MGDSDRDSGG GQTRNGKSPL SPREQDTELI SLVTGKASDK SLKEKRKTVN GDDLLWSMTT LGFEDYVEPL KVYLQGFREI EGERTGLGRP QTGGEGGEHL
101: RDAVGGDGDG LYGGVLEYQF RLVQCIVFWL AYSG

Best Arabidopsis Sequence Match ( AT5G47640.1 )
(BLAST)

001: MGDSDRDSGG GQNGNNQNGQ SSLSPREQDR FLPIANVSRI MKKALPANAK ISKDAKETMQ ECVSEFISFV TGEASDKCQK EKRKTINGDD LLWAMTTLGF
101: EDYVEPLKVY LQRFREIEGE RTGLGRPQTG GEVGEHQRDA VGDGGGFYGG GGGMQYHQHH QFLHQQNHMY GATGGGSDSG GGAASGRTRT

Arabidopsis Description

NFYB2Nuclear transcription factor Y subunit B-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.