Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006991.1-P | Field mustard | nucleus | 77.29 | 99.44 |
| AT3G53340.5 | Thale cress | nucleus | 66.38 | 86.36 |
| CDY18462 | Canola | nucleus | 59.83 | 78.29 |
| CDX78169 | Canola | nucleus | 86.46 | 77.04 |
| PGSC0003DMT400004366 | Potato | nucleus | 44.98 | 73.57 |
| VIT_08s0040g03260.t01 | Wine grape | nucleus | 48.91 | 69.57 |
| CDY18460 | Canola | nucleus | 58.08 | 68.56 |
| CDY72254 | Canola | nucleus | 55.46 | 68.28 |
| Solyc09g007290.2.1 | Tomato | nucleus | 38.43 | 68.22 |
| CDX74880 | Canola | nucleus | 41.92 | 67.61 |
| CDX79714 | Canola | nucleus | 63.76 | 65.77 |
| KXG22176 | Sorghum | nucleus | 48.91 | 62.22 |
| GSMUA_Achr8P17450_001 | Banana | nucleus | 51.97 | 61.34 |
| TraesCS7A01G486400.1 | Wheat | cytosol | 28.38 | 61.32 |
| Zm00001d038397_P005 | Maize | nucleus | 47.6 | 61.24 |
| TraesCS7B01G501400.1 | Wheat | cytoskeleton, cytosol, nucleus | 30.13 | 60.53 |
| CDY21888 | Canola | nucleus | 41.48 | 60.51 |
| CDY20167 | Canola | nucleus | 41.48 | 60.13 |
| Os05t0463800-02 | Rice | nucleus | 48.47 | 60.0 |
| Zm00001d010574_P001 | Maize | nucleus | 48.03 | 58.82 |
| TraesCS1B01G297900.2 | Wheat | nucleus | 46.29 | 58.24 |
| TraesCS1D01G287500.1 | Wheat | nucleus | 45.85 | 57.69 |
| TraesCS1A01G288500.3 | Wheat | nucleus | 45.85 | 57.69 |
| TraesCS5B01G454900.1 | Wheat | cytoskeleton, cytosol, nucleus | 30.13 | 56.56 |
| CDY30123 | Canola | nucleus | 40.61 | 56.36 |
| CDY07691 | Canola | nucleus | 40.61 | 56.02 |
| CDY46752 | Canola | nucleus | 62.45 | 53.56 |
| CDY41061 | Canola | nucleus | 42.36 | 52.72 |
| CDY25955 | Canola | nucleus | 42.79 | 52.41 |
| CDY40552 | Canola | nucleus | 41.92 | 51.89 |
| CDY14422 | Canola | nucleus | 37.12 | 51.83 |
| CDY28916 | Canola | nucleus | 41.92 | 51.61 |
| CDX75855 | Canola | nucleus | 41.48 | 51.08 |
| CDX82424 | Canola | nucleus | 41.48 | 50.26 |
| CDX91501 | Canola | nucleus | 44.1 | 47.64 |
| CDY53021 | Canola | nucleus | 31.88 | 47.1 |
| CDX77785 | Canola | cytosol | 27.07 | 46.27 |
| CDX83320 | Canola | nucleus | 31.44 | 46.15 |
| CDX95014 | Canola | nucleus | 25.76 | 44.7 |
| HORVU1Hr1G071620.5 | Barley | nucleus, plastid | 48.03 | 43.65 |
| CDX80136 | Canola | nucleus | 31.44 | 41.86 |
| CDY37212 | Canola | nucleus | 37.12 | 40.87 |
| CDX93117 | Canola | nucleus | 37.12 | 40.67 |
| CDX89608 | Canola | nucleus | 37.12 | 40.67 |
| CDX81449 | Canola | nucleus | 36.24 | 39.9 |
| CDY25952 | Canola | nucleus | 32.31 | 35.75 |
| CDY41063 | Canola | nucleus | 32.31 | 35.41 |
| CDY17715 | Canola | nucleus | 32.31 | 32.03 |
| CDY00411 | Canola | nucleus | 30.13 | 30.0 |
| CDY01304 | Canola | nucleus | 30.13 | 29.87 |
| CDY21520 | Canola | cytosol, nucleus, plastid | 17.47 | 24.1 |
| CDX69967 | Canola | cytosol, nucleus, plastid | 17.03 | 23.64 |
| CDY38832 | Canola | nucleus | 23.14 | 23.14 |
| CDY68650 | Canola | nucleus | 29.69 | 22.67 |
| CDX87185 | Canola | cytosol, nucleus, plastid | 16.59 | 22.49 |
| CDY16839 | Canola | cytosol, nucleus, plastid | 16.59 | 22.49 |
| CDY30639 | Canola | nucleus | 30.57 | 20.47 |
| CDY44761 | Canola | cytosol | 16.59 | 15.83 |
| CDY40760 | Canola | nucleus | 17.03 | 15.73 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | GO:A0A078C9X4 | InterPro:CBFA_NFYB_domain | EnsemblPlants:CDX73560 | ProteinID:CDX73560 |
| ProteinID:CDX73560.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046982 |
| EnsemblPlantsGene:GSBRNA2T00109108001 | InterPro:Histone-fold | InterPro:IPR009072 | PFAM:PF00808 | PRINTS:PR00615 | ScanProsite:PS00685 |
| PANTHER:PTHR11064 | PANTHER:PTHR11064:SF85 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI0004EE15F4 | SEG:seg |
Description
BnaC08g24430D
Coordinates
chrLK031799:+:1254227..1256036
Molecular Weight (calculated)
25236.9 Da
IEP (calculated)
10.192
GRAVY (calculated)
-0.843
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGKIQKRE LLASRLLQRP INLLFLLRSP PHSLPPFSNH HHHPRARSRS QMADSQAKSS GMSPGVGGGG SHESGGDQSP RSMNVREQDR FLPIANISRI
101: MKRGLPANGK IAKDAKETMQ ECVSEFISFV TSEASDKCQR EKRKTINGDD LLWAMTTLGF EEYVEPLKFY LTRYREGDNK GSGKGGESSA KRDGQPGQFL
201: QQGQQGSFSQ GPYGNSQGSH MMVQMPNAE
101: MKRGLPANGK IAKDAKETMQ ECVSEFISFV TSEASDKCQR EKRKTINGDD LLWAMTTLGF EEYVEPLKFY LTRYREGDNK GSGKGGESSA KRDGQPGQFL
201: QQGQQGSFSQ GPYGNSQGSH MMVQMPNAE
001: MAESQAKSPG GCGSHESGGD QSPRSLHVRE QDRFLPIANI SRIMKRGLPA NGKIAKDAKE IVQECVSEFI SFVTSEASDK CQREKRKTIN GDDLLWAMAT
101: LGFEDYMEPL KVYLMRYREM EGDTKGSAKG GDPNAKKDGQ SSQNGQFSQL AHQGPYGNSQ AQQHMMVPMP GTD
101: LGFEDYMEPL KVYLMRYREM EGDTKGSAKG GDPNAKKDGQ SSQNGQFSQL AHQGPYGNSQ AQQHMMVPMP GTD
Arabidopsis Description
NFYB8Nuclear transcription factor Y subunit B-8 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.