Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G501400.1 | Wheat | cytoskeleton, cytosol, nucleus | 80.19 | 74.56 |
| TraesCS5B01G454900.1 | Wheat | cytoskeleton, cytosol, nucleus | 71.7 | 62.3 |
| PGSC0003DMT400004366 | Potato | nucleus | 66.98 | 50.71 |
| VIT_06s0004g03490.t01 | Wine grape | nucleus | 60.38 | 48.12 |
| Solyc04g009520.2.1 | Tomato | nucleus | 37.74 | 46.51 |
| Bra005074.1-P | Field mustard | nucleus | 61.32 | 45.77 |
| CDX74880 | Canola | nucleus | 61.32 | 45.77 |
| PGSC0003DMT400082465 | Potato | nucleus | 56.6 | 45.45 |
| TraesCS1A01G288500.3 | Wheat | nucleus | 77.36 | 45.05 |
| KRH32395 | Soybean | nucleus | 65.09 | 43.12 |
| TraesCS3A01G352900.1 | Wheat | nucleus | 64.15 | 41.72 |
| VIT_08s0040g03260.t01 | Wine grape | nucleus | 61.32 | 40.37 |
| Solyc04g049910.2.1 | Tomato | nucleus | 62.26 | 40.0 |
| VIT_13s0019g03600.t01 | Wine grape | nucleus | 66.04 | 39.77 |
| AT2G38880.8 | Thale cress | nucleus | 61.32 | 39.63 |
| TraesCS1A01G411700.1 | Wheat | nucleus | 50.0 | 38.97 |
| Solyc09g007290.2.1 | Tomato | nucleus | 47.17 | 38.76 |
| AT2G37060.2 | Thale cress | nucleus | 62.26 | 38.15 |
| CDY18462 | Canola | nucleus | 62.26 | 37.71 |
| GSMUA_Achr8P17450_001 | Banana | nucleus | 68.87 | 37.63 |
| CDY07691 | Canola | nucleus | 58.49 | 37.35 |
| CDY14422 | Canola | nucleus | 57.55 | 37.2 |
| Bra006991.1-P | Field mustard | nucleus | 61.32 | 36.52 |
| AT3G53340.5 | Thale cress | nucleus | 58.49 | 35.23 |
| CDY72254 | Canola | nucleus | 61.32 | 34.95 |
| Bra017209.1-P | Field mustard | nucleus | 62.26 | 34.55 |
| CDY18460 | Canola | nucleus | 62.26 | 34.02 |
| Bra023095.1-P | Field mustard | nucleus | 62.26 | 33.0 |
| CDX91501 | Canola | nucleus | 61.32 | 30.66 |
| TraesCS3A01G026900.1 | Wheat | nucleus | 57.55 | 30.2 |
| CDX79714 | Canola | nucleus | 62.26 | 29.73 |
| CDX73560 | Canola | nucleus | 61.32 | 28.38 |
| TraesCS2A01G173500.1 | Wheat | nucleus | 58.49 | 27.43 |
| CDX78169 | Canola | nucleus | 61.32 | 25.29 |
| CDY46752 | Canola | nucleus | 62.26 | 24.72 |
| TraesCS3A01G457100.1 | Wheat | nucleus | 41.51 | 23.16 |
| TraesCS2A01G359400.1 | Wheat | nucleus | 53.77 | 22.89 |
| TraesCS3A01G457000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 33.96 | 20.93 |
| TraesCS7A01G214800.1 | Wheat | cytosol | 36.79 | 18.84 |
| TraesCS6A01G287300.1 | Wheat | nucleus | 39.62 | 17.07 |
| TraesCS6A01G287400.2 | Wheat | cytosol, mitochondrion, nucleus, plastid | 25.47 | 15.79 |
| TraesCS7A01G214500.1 | Wheat | nucleus | 39.62 | 14.09 |
| TraesCS7A01G214600.1 | Wheat | nucleus | 34.91 | 13.91 |
| TraesCS7A01G214900.1 | Wheat | nucleus | 34.91 | 13.91 |
| TraesCS7A01G214700.1 | Wheat | nucleus | 35.85 | 13.87 |
| TraesCS3A01G450700.1 | Wheat | cytosol, mitochondrion, nucleus | 22.64 | 8.25 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G486400.1 | EnsemblPlantsGene:TraesCS7A01G486400 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF37 | PRINTS:PR00615 |
| SEG:seg | SUPFAM:SSF47113 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr7A:-:676836387..676836841
Molecular Weight (calculated)
11899.4 Da
IEP (calculated)
7.183
GRAVY (calculated)
-0.259
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDAPASPPG GGFGGVREQD RFLPIANIRS IMKMAILANG KITKDDKETV WEASDKCQRE KCKTINIDDL LWPMATLGFQ EYIEPLKVYL QNYRGACPFS
101: HVGFFI
101: HVGFFI
001: MADTPSSPAG DGGESGGSVR EQDRYLPIAN ISRIMKKALP PNGKIGKDAK DTVQECVSEF ISFITSEASD KCQKEKRKTV NGDDLLWAMA TLGFEDYLEP
101: LKIYLARYRE VCCFDSLIMC SEILNILVKR LVAVSNIEAC HDSSFTIPSI RLV
101: LKIYLARYRE VCCFDSLIMC SEILNILVKR LVAVSNIEAC HDSSFTIPSI RLV
Arabidopsis Description
NF-YB1Nuclear factor Y, subunit B1 [Source:UniProtKB/TrEMBL;Acc:F4ITZ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.