Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG95922 | Soybean | nucleus | 90.23 | 73.62 |
| KRH67637 | Soybean | nucleus | 87.97 | 68.42 |
| VIT_08s0040g03260.t01 | Wine grape | nucleus | 81.2 | 67.08 |
| VIT_13s0019g03600.t01 | Wine grape | nucleus | 84.96 | 64.2 |
| Zm00001d038397_P005 | Maize | nucleus | 84.21 | 62.92 |
| KXG22176 | Sorghum | nucleus | 84.96 | 62.78 |
| Os05t0463800-02 | Rice | nucleus | 84.21 | 60.54 |
| TraesCS7A01G486400.1 | Wheat | cytosol | 48.12 | 60.38 |
| Zm00001d010574_P001 | Maize | nucleus | 84.21 | 59.89 |
| TraesCS7B01G501400.1 | Wheat | cytoskeleton, cytosol, nucleus | 51.13 | 59.65 |
| GSMUA_Achr8P17450_001 | Banana | nucleus | 84.21 | 57.73 |
| TraesCS1D01G287500.1 | Wheat | nucleus | 78.2 | 57.14 |
| TraesCS1B01G297900.2 | Wheat | nucleus | 77.44 | 56.59 |
| TraesCS1A01G288500.3 | Wheat | nucleus | 76.69 | 56.04 |
| TraesCS5B01G454900.1 | Wheat | cytoskeleton, cytosol, nucleus | 49.62 | 54.1 |
| VIT_05s0020g01350.t01 | Wine grape | nucleus | 52.63 | 50.72 |
| VIT_19s0015g00440.t01 | Wine grape | nucleus | 68.42 | 43.33 |
| VIT_00s0259g00180.t01 | Wine grape | nucleus | 65.41 | 42.03 |
| VIT_07s0104g01640.t01 | Wine grape | nucleus | 54.89 | 41.71 |
| HORVU1Hr1G071620.5 | Barley | nucleus, plastid | 77.44 | 40.87 |
| VIT_14s0060g02660.t01 | Wine grape | nucleus | 44.36 | 40.14 |
| VIT_00s1287g00010.t01 | Wine grape | nucleus | 65.41 | 39.91 |
| VIT_01s0010g01910.t01 | Wine grape | cytosol | 42.86 | 37.5 |
| VIT_07s0031g01460.t01 | Wine grape | nucleus | 57.14 | 36.54 |
| VIT_01s0010g01940.t01 | Wine grape | cytosol | 40.6 | 35.53 |
| VIT_00s0956g00020.t01 | Wine grape | nucleus | 50.38 | 31.75 |
| VIT_12s0057g01010.t01 | Wine grape | nucleus | 66.17 | 30.14 |
| VIT_19s0015g00580.t01 | Wine grape | nucleus | 46.62 | 29.67 |
| VIT_19s0015g00590.t01 | Wine grape | cytosol, mitochondrion, nucleus | 42.11 | 26.05 |
| VIT_17s0000g04350.t01 | Wine grape | cytosol, mitochondrion, nucleus | 27.07 | 23.23 |
Protein Annotations
| Gene3D:1.10.20.10 | EntrezGene:100258807 | wikigene:100258807 | MapMan:15.5.51.2 | InterPro:CBFA_NFYB_domain | ProteinID:CBI16248 |
| ProteinID:CBI16248.3 | UniProt:D7SKS0 | EMBL:FN594951 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009414 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046982 | InterPro:Histone-fold |
| InterPro:IPR009072 | EntrezGene:LOC100258807 | wikigene:LOC100258807 | PFAM:PF00808 | PRINTS:PR00615 | ScanProsite:PS00685 |
| PANTHER:PTHR11064 | PANTHER:PTHR11064:SF85 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI00015C7C03 | ArrayExpress:VIT_06s0004g03490 |
| EnsemblPlantsGene:VIT_06s0004g03490 | EnsemblPlants:VIT_06s0004g03490.t01 | unigene:Vvi.17625 | RefSeq:XP_002284842 | RefSeq:XP_002284842.1 | SEG:seg |
Description
No Description!
Coordinates
chr6:-:4347843..4348962
Molecular Weight (calculated)
14559.1 Da
IEP (calculated)
7.508
GRAVY (calculated)
-0.768
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEAPTSPGG GGSHESGEHS PRSNVREQDR YLPIANISRI MKKALPANGK IAKDAKETLQ ECVSEFISFI TSEASDKCQK EKRKTINGDD LLWAMATLGF
101: EDYIDPLKVY LHRFREGDAK GSVKGGDGST KKD
101: EDYIDPLKVY LHRFREGDAK GSVKGGDGST KKD
001: MAESQAKSPG GCGSHESGGD QSPRSLHVRE QDRFLPIANI SRIMKRGLPA NGKIAKDAKE IVQECVSEFI SFVTSEASDK CQREKRKTIN GDDLLWAMAT
101: LGFEDYMEPL KVYLMRYREM EGDTKGSAKG GDPNAKKDGQ SSQNGQFSQL AHQGPYGNSQ AQQHMMVPMP GTD
101: LGFEDYMEPL KVYLMRYREM EGDTKGSAKG GDPNAKKDGQ SSQNGQFSQL AHQGPYGNSQ AQQHMMVPMP GTD
Arabidopsis Description
NFYB8Nuclear transcription factor Y subunit B-8 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.