Factsheet for VIT_07s0031g01460.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P02820_001	Banana	nucleus	52.4	64.5
VIT_06s0004g03490.t01	Wine grape	nucleus	36.54	57.14
VIT_05s0020g01350.t01	Wine grape	nucleus	35.1	52.9
Solyc04g054150.1.1	Tomato	nucleus	47.6	52.66
PGSC0003DMT400095009	Potato	nucleus	47.12	51.31
VIT_08s0040g03260.t01	Wine grape	nucleus	39.42	50.93
VIT_13s0019g03600.t01	Wine grape	nucleus	39.9	47.16
HORVU2Hr1G087460.1	Barley	nucleus	56.25	46.99
TraesCS2B01G378700.1	Wheat	nucleus	56.25	46.99
TraesCS2A01G359400.1	Wheat	nucleus	55.77	46.59
TraesCS2D01G358300.1	Wheat	nucleus	55.77	46.59
VIT_07s0104g01640.t01	Wine grape	nucleus	38.94	46.29
VIT_01s0010g01910.t01	Wine grape	cytosol	33.65	46.05
VIT_14s0060g02660.t01	Wine grape	nucleus	32.21	45.58
VIT_00s0259g00180.t01	Wine grape	nucleus	45.19	45.41
VIT_19s0015g00440.t01	Wine grape	nucleus	44.23	43.81
Zm00001d049485_P001	Maize	nucleus	54.33	43.63
VIT_00s1287g00010.t01	Wine grape	nucleus	45.19	43.12
KRH59435	Soybean	nucleus	46.63	43.11
EES14637	Sorghum	nucleus	55.29	41.82
VIT_01s0010g01940.t01	Wine grape	cytosol	30.29	41.45
KRH43304	Soybean	nucleus	46.63	41.1
Os08t0174500-01	Rice	nucleus	54.81	38.38
VIT_00s0956g00020.t01	Wine grape	nucleus	33.65	33.18
VIT_12s0057g01010.t01	Wine grape	nucleus	46.15	32.88
VIT_19s0015g00580.t01	Wine grape	nucleus	29.81	29.67
VIT_19s0015g00590.t01	Wine grape	cytosol, mitochondrion, nucleus	25.96	25.12
VIT_17s0000g04350.t01	Wine grape	cytosol, mitochondrion, nucleus	16.83	22.58

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100245836	wikigene:100245836	MapMan:15.5.51.2	InterPro:CBFA_NFYB_domain	ProteinID:CCB47112
ProteinID:CCB47112.1	UniProt:F6H4A1	EMBL:FN595233	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009653	GO:GO:0009791	GO:GO:0009987
GO:GO:0016043	GO:GO:0016049	GO:GO:0040007	GO:GO:0043565	GO:GO:0046982	GO:GO:0048579
GO:GO:0051512	InterPro:Histone-fold	InterPro:IPR009072	EntrezGene:LOC100245836	wikigene:LOC100245836	PFAM:PF00808
PRINTS:PR00615	ScanProsite:PS00685	PANTHER:PTHR11064	PANTHER:PTHR11064:SF9	SUPFAM:SSF47113	InterPro:Transcrpt_fac_NFYB/HAP3_CS
UniParc:UPI0001983A33	ArrayExpress:VIT_07s0031g01460	EnsemblPlantsGene:VIT_07s0031g01460	EnsemblPlants:VIT_07s0031g01460.t01	RefSeq:XP_002276300	RefSeq:XP_002276300.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7:+:17548668..17549294

Molecular Weight (calculated)

22916.8 Da

IEP (calculated)

8.175

GRAVY (calculated)

-0.721

Length

208 amino acids

Sequence
(BLAST)

001: MTGKRAQNSP VGSPSSDTSS SKEQDRFLPI ANVSRIMKKS LPANAKISKE AKETVQECVS EFISFITGEA SDKCQREKRK TINGDDLLWA MTMLGFENYV
101: GPLKVYLSKY RETEGEKNNV VARHEDQSAV FNSNQMNKAN KSIPIDPDFQ GFNGGFYSLG PQMNGDEAAA AMGYGDSLVT GAFNRSRIRE NDGNGNRIMA
201: SYSSPQWS

Best Arabidopsis Sequence Match ( AT4G14540.1 )
(BLAST)

001: MADSDNDSGG HKDGGNASTR EQDRFLPIAN VSRIMKKALP ANAKISKDAK ETVQECVSEF ISFITGEASD KCQREKRKTI NGDDLLWAMT TLGFEDYVEP
101: LKVYLQKYRE VEGEKTTTAG RQGDKEGGGG GGGAGSGSGG APMYGGGMVT TMGHQFSHHF S

Arabidopsis Description

NFYB3Nuclear transcription factor Y subunit B-3 [Source:UniProtKB/Swiss-Prot;Acc:O23310]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.