Factsheet for VIT_00s0259g00180.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1287g00010.t01	Wine grape	nucleus	100.0	94.95
VIT_19s0015g00440.t01	Wine grape	nucleus	66.67	65.71
VIT_06s0004g03490.t01	Wine grape	nucleus	42.03	65.41
GSMUA_Achr2P13670_001	Banana	nucleus	52.66	65.27
GSMUA_Achr4P27850_001	Banana	nucleus	59.42	63.73
VIT_08s0040g03260.t01	Wine grape	nucleus	43.96	56.52
VIT_05s0020g01350.t01	Wine grape	nucleus	37.2	55.8
VIT_13s0019g03600.t01	Wine grape	nucleus	46.38	54.55
VIT_14s0060g02660.t01	Wine grape	nucleus	34.78	48.98
VIT_12s0057g01010.t01	Wine grape	nucleus	66.67	47.26
VIT_01s0010g01910.t01	Wine grape	cytosol	34.3	46.71
VIT_07s0104g01640.t01	Wine grape	nucleus	38.65	45.71
VIT_07s0031g01460.t01	Wine grape	nucleus	45.41	45.19
VIT_01s0010g01940.t01	Wine grape	cytosol	31.4	42.76
VIT_00s0956g00020.t01	Wine grape	nucleus	37.68	36.97
VIT_19s0015g00580.t01	Wine grape	nucleus	31.4	31.1
VIT_19s0015g00590.t01	Wine grape	cytosol, mitochondrion, nucleus	29.47	28.37
VIT_17s0000g04350.t01	Wine grape	cytosol, mitochondrion, nucleus	18.36	24.52

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100854000	wikigene:100854000	EntrezGene:100854372	wikigene:100854372	MapMan:15.5.51.2
InterPro:CBFA_NFYB_domain	ProteinID:CCB45194	ProteinID:CCB45194.1	UniProt:F6GZ03	EMBL:FN594980	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072
EntrezGene:LOC100854000	wikigene:LOC100854000	EntrezGene:LOC100854372	wikigene:LOC100854372	PFAM:PF00808	PRINTS:PR00615
ScanProsite:PS00685	PANTHER:PTHR11064	PANTHER:PTHR11064:SF87	SUPFAM:SSF47113	TIGR:TC60285	InterPro:Transcrpt_fac_NFYB/HAP3_CS
UniParc:UPI00015CE026	ArrayExpress:VIT_00s0259g00180	EnsemblPlantsGene:VIT_00s0259g00180	EnsemblPlants:VIT_00s0259g00180.t01	unigene:Vvi.10309	RefSeq:XP_003635155
RefSeq:XP_003635155.1	RefSeq:XP_003635539.1	RefSeq:XP_010646630.1	SEG:seg	:	:

Description

No Description!

Coordinates

chrUn:+:18504237..18505237

Molecular Weight (calculated)

21910.5 Da

IEP (calculated)

6.796

GRAVY (calculated)

-0.738

Length

207 amino acids

Sequence
(BLAST)

001: MADSDNDSGG AQNNNSGGNV NSELSAREQD RLLPIANVSR IMKKALPANA KISKDAKETV QECVSEFISF VTGEASDKCQ REKRKTINGD DLLWAMMTLG
101: FEEYVEPLKV YLQKFREVEG EKTAVGRQVE KDGGGSSGDG GNGGVVNTGN FGSGYGAMQQ TMMMMGHHQH HQGHVYGSGS YHQMGSGSRP TSGGSSSGGG
201: AATGRPR

Best Arabidopsis Sequence Match ( AT4G14540.1 )
(BLAST)

001: MADSDNDSGG HKDGGNASTR EQDRFLPIAN VSRIMKKALP ANAKISKDAK ETVQECVSEF ISFITGEASD KCQREKRKTI NGDDLLWAMT TLGFEDYVEP
101: LKVYLQKYRE VEGEKTTTAG RQGDKEGGGG GGGAGSGSGG APMYGGGMVT TMGHQFSHHF S

Arabidopsis Description

NFYB3Nuclear transcription factor Y subunit B-3 [Source:UniProtKB/Swiss-Prot;Acc:O23310]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.