Subcellular Localization
min:
: max
Winner_takes_all: cytoskeleton, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G486400.1 | Wheat | cytosol | 74.56 | 80.19 |
| TraesCS5B01G454900.1 | Wheat | cytoskeleton, cytosol, nucleus | 82.46 | 77.05 |
| PGSC0003DMT400004366 | Potato | nucleus | 66.67 | 54.29 |
| VIT_06s0004g03490.t01 | Wine grape | nucleus | 59.65 | 51.13 |
| TraesCS1B01G297900.2 | Wheat | nucleus | 76.32 | 47.8 |
| PGSC0003DMT400082465 | Potato | nucleus | 55.26 | 47.73 |
| Solyc04g009520.2.1 | Tomato | nucleus | 35.96 | 47.67 |
| CDX74880 | Canola | nucleus | 57.02 | 45.77 |
| Bra005074.1-P | Field mustard | nucleus | 56.14 | 45.07 |
| TraesCS3B01G385600.1 | Wheat | nucleus | 64.04 | 44.79 |
| KRH32395 | Soybean | nucleus | 62.28 | 44.38 |
| VIT_08s0040g03260.t01 | Wine grape | nucleus | 58.77 | 41.61 |
| VIT_13s0019g03600.t01 | Wine grape | nucleus | 64.04 | 41.48 |
| Solyc04g049910.2.1 | Tomato | nucleus | 58.77 | 40.61 |
| TraesCS1B01G442000.1 | Wheat | nucleus | 48.25 | 40.44 |
| CDY18462 | Canola | nucleus | 61.4 | 40.0 |
| AT2G37060.2 | Thale cress | nucleus | 60.53 | 39.88 |
| GSMUA_Achr8P17450_001 | Banana | nucleus | 67.54 | 39.69 |
| AT2G38880.8 | Thale cress | nucleus | 57.02 | 39.63 |
| Solyc09g007290.2.1 | Tomato | nucleus | 44.74 | 39.53 |
| Bra006991.1-P | Field mustard | nucleus | 60.53 | 38.76 |
| AT3G53340.5 | Thale cress | nucleus | 59.65 | 38.64 |
| CDY07691 | Canola | nucleus | 54.39 | 37.35 |
| Bra017209.1-P | Field mustard | nucleus | 61.4 | 36.65 |
| CDY14422 | Canola | nucleus | 52.63 | 36.59 |
| CDY72254 | Canola | nucleus | 59.65 | 36.56 |
| CDY18460 | Canola | nucleus | 61.4 | 36.08 |
| Bra023095.1-P | Field mustard | nucleus | 60.53 | 34.5 |
| TraesCS3B01G452700.1 | Wheat | cytosol | 36.84 | 32.56 |
| CDX79714 | Canola | nucleus | 60.53 | 31.08 |
| TraesCS3B01G017400.1 | Wheat | nucleus | 57.02 | 30.66 |
| CDX91501 | Canola | nucleus | 57.02 | 30.66 |
| CDX73560 | Canola | nucleus | 60.53 | 30.13 |
| TraesCS2B01G199800.1 | Wheat | nucleus | 57.02 | 28.89 |
| CDX78169 | Canola | nucleus | 60.53 | 26.85 |
| CDY46752 | Canola | nucleus | 60.53 | 25.84 |
| TraesCS2B01G378700.1 | Wheat | nucleus | 51.75 | 23.69 |
| TraesCS6B01G316700.1 | Wheat | cytosol, nucleus, plastid | 27.19 | 19.02 |
| TraesCS6B01G316600.1 | Wheat | nucleus | 39.47 | 18.29 |
| TraesCS7B01G121900.1 | Wheat | nucleus | 32.46 | 13.21 |
| TraesCS7B01G121800.1 | Wheat | nucleus | 34.21 | 13.0 |
| TraesCS3B01G487800.1 | Wheat | cytosol, mitochondrion, nucleus | 21.93 | 8.45 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G501400.1 | EnsemblPlantsGene:TraesCS7B01G501400 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046982 | InterPro:CBFA_NFYB_domain | InterPro:Histone-fold | InterPro:IPR009072 | ncoils:Coil | PANTHER:PTHR11064 |
| PANTHER:PTHR11064:SF37 | PFAM:PF00808 | PRINTS:PR00615 | SEG:seg | SUPFAM:SSF47113 | MapMan:15.5.51.2 |
Description
No Description!
Coordinates
chr7B:-:750370851..750371328
Molecular Weight (calculated)
12613.2 Da
IEP (calculated)
6.957
GRAVY (calculated)
-0.348
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDAPASPPG GGGGGDGGGF GGVREQDRFL HIANISSIMK KAILANDKIA KDAKETLREA SDKCQREKLK TINIDELLWA MATLGFQEHI EPLKVYLQKY
101: REVHAHLAMW DFFI
101: REVHAHLAMW DFFI
001: MADTPSSPAG DGGESGGSVR EQDRYLPIAN ISRIMKKALP PNGKIGKDAK DTVQECVSEF ISFITSEASD KCQKEKRKTV NGDDLLWAMA TLGFEDYLEP
101: LKIYLARYRE VW
101: LKIYLARYRE VW
Arabidopsis Description
NF-YB1Nuclear factor Y, subunit B1 [Source:UniProtKB/TrEMBL;Acc:F4ITZ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.