Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037211.1-P | Field mustard | nucleus | 99.52 | 99.52 |
| CDX81449 | Canola | nucleus | 97.12 | 97.12 |
| CDX89608 | Canola | nucleus | 91.35 | 90.91 |
| CDX93117 | Canola | nucleus | 90.87 | 90.43 |
| AT2G13570.1 | Thale cress | nucleus | 86.06 | 83.26 |
| PGSC0003DMT400043176 | Potato | nucleus | 55.29 | 58.08 |
| CDY21888 | Canola | nucleus | 42.79 | 56.69 |
| CDY20167 | Canola | nucleus | 42.79 | 56.33 |
| CDY30123 | Canola | nucleus | 43.27 | 54.55 |
| Solyc12g027650.1.1 | Tomato | nucleus | 53.37 | 53.37 |
| CDX74880 | Canola | nucleus | 36.06 | 52.82 |
| CDX95014 | Canola | nucleus | 32.69 | 51.52 |
| KRH59594 | Soybean | nucleus | 50.96 | 51.21 |
| KRH40945 | Soybean | nucleus | 52.88 | 49.77 |
| CDX75855 | Canola | nucleus | 44.23 | 49.46 |
| CDX82424 | Canola | nucleus | 44.23 | 48.68 |
| CDY18462 | Canola | nucleus | 40.38 | 48.0 |
| CDY41061 | Canola | nucleus | 42.31 | 47.83 |
| CDY53021 | Canola | nucleus | 35.58 | 47.74 |
| CDY40552 | Canola | nucleus | 42.31 | 47.57 |
| CDX83320 | Canola | nucleus | 35.58 | 47.44 |
| CDY25955 | Canola | nucleus | 42.31 | 47.06 |
| CDY28916 | Canola | nucleus | 41.83 | 46.77 |
| CDY07691 | Canola | nucleus | 36.06 | 45.18 |
| CDY72254 | Canola | nucleus | 39.42 | 44.09 |
| CDX80136 | Canola | nucleus | 36.06 | 43.6 |
| CDY14422 | Canola | nucleus | 33.65 | 42.68 |
| CDY18460 | Canola | nucleus | 39.42 | 42.27 |
| CDX79714 | Canola | nucleus | 40.87 | 38.29 |
| CDX73560 | Canola | nucleus | 40.87 | 37.12 |
| CDX77785 | Canola | cytosol | 23.56 | 36.57 |
| CDX91501 | Canola | nucleus | 37.02 | 36.32 |
| CDX78169 | Canola | nucleus | 40.87 | 33.07 |
| CDY25952 | Canola | nucleus | 32.69 | 32.85 |
| CDY41063 | Canola | nucleus | 32.69 | 32.54 |
| CDY46752 | Canola | nucleus | 41.35 | 32.21 |
| CDY00411 | Canola | nucleus | 32.69 | 29.57 |
| CDY01304 | Canola | nucleus | 32.69 | 29.44 |
| CDY17715 | Canola | nucleus | 31.73 | 28.57 |
| CDY68650 | Canola | nucleus | 32.21 | 22.33 |
| CDX69967 | Canola | cytosol, nucleus, plastid | 16.35 | 20.61 |
| CDY38832 | Canola | nucleus | 22.6 | 20.52 |
| CDY21520 | Canola | cytosol, nucleus, plastid | 16.35 | 20.48 |
| CDY30639 | Canola | nucleus | 33.17 | 20.18 |
| CDY16839 | Canola | cytosol, nucleus, plastid | 16.35 | 20.12 |
| CDX87185 | Canola | cytosol, nucleus, plastid | 16.35 | 20.12 |
| CDY44761 | Canola | cytosol | 15.87 | 13.75 |
| CDY40760 | Canola | nucleus | 14.9 | 12.5 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | GO:A0A078HH52 | UniProt:A0A078HH52 | InterPro:CBFA_NFYB_domain | EnsemblPlants:CDY37212 |
| ProteinID:CDY37212 | ProteinID:CDY37212.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| GO:GO:0046982 | EnsemblPlantsGene:GSBRNA2T00063695001 | InterPro:Histone-fold | InterPro:IPR009072 | PFAM:PF00808 | PRINTS:PR00615 |
| ScanProsite:PS00685 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF9 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI0004EDF2FB |
| SEG:seg | : | : | : | : | : |
Description
BnaA09g08330DBnaA09g08330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HH52]
Coordinates
chrLK032395:-:94849..95475
Molecular Weight (calculated)
23719.4 Da
IEP (calculated)
6.232
GRAVY (calculated)
-1.056
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEESPEEDH KSPEGAETNL GSSSLKNNNI NNKEQDRFLP IANVGRIMKK VLPGNGKISK DAKETVQECV SEFISFVTGE ASDKCQREKR KTINGDDIIW
101: AITTLGFEDY VAPLKIYLGK YRETEGEKVN SPKQRHQQQQ PQHNHHFQFQ EQDHNNISCT SYISQHHPSP FLPADHQPFP NLPFSPKSLQ NQFPQQNDNT
201: DSMGQWSV
101: AITTLGFEDY VAPLKIYLGK YRETEGEKVN SPKQRHQQQQ PQHNHHFQFQ EQDHNNISCT SYISQHHPSP FLPADHQPFP NLPFSPKSLQ NQFPQQNDNT
201: DSMGQWSV
001: MTEESPEEDH GSPGVAETNP GSPSSKTNNN NNNNKEQDRF LPIANVGRIM KKVLPGNGKI SKDAKETVQE CVSEFISFVT GEASDKCQRE KRKTINGDDI
101: IWAITTLGFE DYVAPLKVYL CKYRDTEGEK VNSPKQQQQR QQQQQIQQQN HHNYQFQEQD QNNNNMSCTS YISHHHPSPF LPVDHQPFPN IAFSPKSLQK
201: QFPQQHDNNI DSIHW
101: IWAITTLGFE DYVAPLKVYL CKYRDTEGEK VNSPKQQQQR QQQQQIQQQN HHNYQFQEQD QNNNNMSCTS YISHHHPSPF LPVDHQPFPN IAFSPKSLQK
201: QFPQQHDNNI DSIHW
Arabidopsis Description
NFYB7Uncharacterized protein At2g13570 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV44]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.