CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75855
CDX82424
CDY20167
CDY21888
CDY30123

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12480.1	CDX75855	AT4G14540.1	21798944
AT3G12480.1	CDX82424	AT4G14540.1	21798944
AT3G12480.1	CDY20167	AT4G14540.1	21798944
AT3G12480.1	CDY21888	AT4G14540.1	21798944
AT3G12480.1	CDY30123	AT4G14540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00772	Canola	nucleus	98.95	98.95
CDX73821	Canola	nucleus	95.82	95.82
CDY50522	Canola	nucleus	87.8	87.2
CDY50342	Canola	nucleus	85.37	83.62
AT3G12480.1	Thale cress	nucleus	81.53	79.86
CDX70004	Canola	nucleus	60.63	58.19
CDX99011	Canola	nucleus	59.93	56.95
Solyc01g096710.2.1	Tomato	nucleus	49.83	51.81
PGSC0003DMT400008518	Potato	nucleus	49.48	51.45
KRH20611	Soybean	nucleus	51.22	51.22
KRH56225	Soybean	nucleus	50.52	49.66
KRH13272	Soybean	nucleus	50.52	48.49
VIT_13s0084g00040.t01	Wine grape	nucleus	51.92	45.71
HORVU1Hr1G067880.1	Barley	nucleus	43.55	44.48
TraesCS1A01G310700.1	Wheat	nucleus	43.55	44.17
TraesCS1B01G322000.1	Wheat	nucleus	43.55	44.17
TraesCS1D01G310200.1	Wheat	nucleus	43.55	44.01
Os05t0494100-01	Rice	nucleus	43.9	43.45
CDY42268	Canola	mitochondrion, nucleus	37.63	41.7
CDY08432	Canola	nucleus	29.62	40.09
OQU78230	Sorghum	nucleus	40.77	39.8
HORVU1Hr1G067990.1	Barley	nucleus	41.81	38.34
GSMUA_Achr4P00270_001	Banana	mitochondrion	34.49	37.36
Zm00001d038557_P001	Maize	golgi	41.81	35.5

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.5.7.1.1	GO:A0A078EI38	UniProt:A0A078EI38	ProteinID:AHJ80502.1	InterPro:CBFA_NFYB_domain
EnsemblPlants:CDY00771	ProteinID:CDY00771	ProteinID:CDY00771.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982	EnsemblPlantsGene:GSBRNA2T00110653001
InterPro:Histone-fold	InterPro:IPR009072	PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF70	SUPFAM:SSF47113
UniParc:UPI0004EBD282	SEG:seg	:	:	:	:

Description

BnaC03g37550DTranscription factor subunit NF-YC11B [Source:UniProtKB/TrEMBL;Acc:A0A078EI38]

Coordinates

chrLK031921:+:1052496..1054686

Molecular Weight (calculated)

31949.2 Da

IEP (calculated)

4.732

GRAVY (calculated)

-0.891

Length

287 amino acids

Sequence
(BLAST)

001: MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK TVSSLHLKNC VERYNVFDFL REVVSKVPDY GHAQGQGHGD
101: VTMEDRSISK RRKPTSDEVN DSDEESKKSK TQEMGNAKPS GRGSRGRGRG RGRGGRAARA AERENLNNRE MELESSMVEQ KPPQDSIQMH VSVSSPQEIE
201: KEDGIAASNE DTKQQLQTPK EGIDIDLNAE SLNLNETKPA PVAATDTATA SEEYTCWSME LGTIDPAQFA SLGKRIDEDE EDYDEEV

Best Arabidopsis Sequence Match ( AT3G12480.1 )
(BLAST)

001: MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK TVSSLHLKHC VERYNVFDFL REVVSKVPDY GHSQGQGHGD
101: VTMDDRSISK RRKPISDEVN DSDEEYKKSK TQEIGSAKTS GRGGRGRGRG RGRGGRAAKA AEREGLNREM EVEAANSGQP PPEDNVKMHA SESSPQEDEK
201: KGIDGTAASN EDTKQHLQSP KEGIDFDLNA ESLDLNETKL APATGTTTTT TAATDSEEYS GWPMMDISKM DPAQLASLGK RIDEDEEDYD EEG

Arabidopsis Description

NF-YC11NF-YC11 [Source:UniProtKB/TrEMBL;Acc:A0A178VDL4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.