Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX99011 | Canola | nucleus | 91.64 | 90.73 |
| Bra009295.1-P | Field mustard | nucleus | 78.26 | 78.0 |
| CDX73821 | Canola | nucleus | 58.53 | 60.98 |
| CDY50522 | Canola | nucleus | 58.86 | 60.9 |
| CDY00771 | Canola | nucleus | 58.19 | 60.63 |
| CDY00772 | Canola | nucleus | 57.86 | 60.28 |
| CDY50342 | Canola | nucleus | 58.19 | 59.39 |
| KRH56225 | Soybean | nucleus | 52.51 | 53.77 |
| KRH20611 | Soybean | nucleus | 51.51 | 53.66 |
| KRH13272 | Soybean | nucleus | 52.17 | 52.17 |
| Solyc01g096710.2.1 | Tomato | nucleus | 47.49 | 51.45 |
| PGSC0003DMT400008518 | Potato | nucleus | 47.16 | 51.09 |
| VIT_13s0084g00040.t01 | Wine grape | nucleus | 51.51 | 47.24 |
| HORVU1Hr1G067880.1 | Barley | nucleus | 44.15 | 46.98 |
| TraesCS1D01G310200.1 | Wheat | nucleus | 42.81 | 45.07 |
| Os05t0494100-01 | Rice | nucleus | 43.48 | 44.83 |
| TraesCS1A01G310700.1 | Wheat | nucleus | 42.14 | 44.52 |
| TraesCS1B01G322000.1 | Wheat | nucleus | 42.14 | 44.52 |
| OQU78230 | Sorghum | nucleus | 42.47 | 43.2 |
| CDY42268 | Canola | mitochondrion, nucleus | 36.79 | 42.47 |
| HORVU1Hr1G067990.1 | Barley | nucleus | 43.14 | 41.21 |
| CDY08432 | Canola | nucleus | 27.76 | 39.15 |
| GSMUA_Achr4P00270_001 | Banana | mitochondrion | 33.78 | 38.11 |
| Zm00001d038557_P001 | Maize | golgi | 41.47 | 36.69 |
Protein Annotations
| EnsemblPlants:CDX70004 | EnsemblPlantsGene:GSBRNA2T00136096001 | Gene3D:1.10.20.10 | GO:A0A078C1C5 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046982 | InterPro:CBFA_NFYB_domain | InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR10252 |
| PANTHER:PTHR10252:SF70 | PFAM:PF00808 | ProteinID:CDX70004 | ProteinID:CDX70004.1 | SEG:seg | SUPFAM:SSF47113 |
| UniParc:UPI0004EE1E78 | MapMan:15.3.5.7.1.1 | : | : | : | : |
Description
BnaA10g23530D
Coordinates
chrLK031790:-:2664123..2666007
Molecular Weight (calculated)
33268.0 Da
IEP (calculated)
4.843
GRAVY (calculated)
-0.892
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK TVSSLHLKNC VETYNVFDFL REVVSKVPDY GHGHGHGHGN
101: GQADATMDDR TFSKRRKPTG DEANDSDEEI KKTKVQETGQ VGPSGRGRGR GRGRGRGRSA KTAEKELLQR EMETEPTILS APPQLTQDGI TMPSLTQQQD
201: TEKKDVDDMS KQELQSPKAG NDDTNSVLGR DFDLNTQTLE VETKPPVVVV TTASRETTKP EEYPGWSISD IGNMDPMQLA SMGKRLDEEE EEDYDEVEA
101: GQADATMDDR TFSKRRKPTG DEANDSDEEI KKTKVQETGQ VGPSGRGRGR GRGRGRGRSA KTAEKELLQR EMETEPTILS APPQLTQDGI TMPSLTQQQD
201: TEKKDVDDMS KQELQSPKAG NDDTNSVLGR DFDLNTQTLE VETKPPVVVV TTASRETTKP EEYPGWSISD IGNMDPMQLA SMGKRLDEEE EEDYDEVEA
001: MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK TVSSLHLKHC VERYNVFDFL REVVSKVPDY GHSQGQGHGD
101: VTMDDRSISK RRKPISDEVN DSDEEYKKSK TQEIGSAKTS GRGGRGRGRG RGRGGRAAKA AEREGLNREM EVEAANSGQP PPEDNVKMHA SESSPQEDEK
201: KGIDGTAASN EDTKQHLQSP KEGIDFDLNA ESLDLNETKL APATGTTTTT TAATDSEEYS GWPMMDISKM DPAQLASLGK RIDEDEEDYD EEG
101: VTMDDRSISK RRKPISDEVN DSDEEYKKSK TQEIGSAKTS GRGGRGRGRG RGRGGRAAKA AEREGLNREM EVEAANSGQP PPEDNVKMHA SESSPQEDEK
201: KGIDGTAASN EDTKQHLQSP KEGIDFDLNA ESLDLNETKL APATGTTTTT TAATDSEEYS GWPMMDISKM DPAQLASLGK RIDEDEEDYD EEG
Arabidopsis Description
NF-YC11NF-YC11 [Source:UniProtKB/TrEMBL;Acc:A0A178VDL4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.