Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G12480.1 | CDX75855 | AT4G14540.1 | 21798944 |
| AT3G12480.1 | CDX82424 | AT4G14540.1 | 21798944 |
| AT3G12480.1 | CDY20167 | AT4G14540.1 | 21798944 |
| AT3G12480.1 | CDY21888 | AT4G14540.1 | 21798944 |
| AT3G12480.1 | CDY30123 | AT4G14540.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00771 | Canola | nucleus | 98.95 | 98.95 |
| CDX73821 | Canola | nucleus | 96.52 | 96.52 |
| CDY50522 | Canola | nucleus | 88.15 | 87.54 |
| CDY50342 | Canola | nucleus | 85.71 | 83.96 |
| AT3G12480.1 | Thale cress | nucleus | 81.88 | 80.2 |
| CDX70004 | Canola | nucleus | 60.28 | 57.86 |
| CDX99011 | Canola | nucleus | 59.58 | 56.62 |
| Solyc01g096710.2.1 | Tomato | nucleus | 49.83 | 51.81 |
| PGSC0003DMT400008518 | Potato | nucleus | 49.48 | 51.45 |
| KRH20611 | Soybean | nucleus | 51.22 | 51.22 |
| KRH56225 | Soybean | nucleus | 50.87 | 50.0 |
| KRH13272 | Soybean | nucleus | 50.52 | 48.49 |
| VIT_13s0084g00040.t01 | Wine grape | nucleus | 52.26 | 46.01 |
| TraesCS1A01G310700.1 | Wheat | nucleus | 43.55 | 44.17 |
| TraesCS1B01G322000.1 | Wheat | nucleus | 43.55 | 44.17 |
| HORVU1Hr1G067880.1 | Barley | nucleus | 43.21 | 44.13 |
| TraesCS1D01G310200.1 | Wheat | nucleus | 43.55 | 44.01 |
| Os05t0494100-01 | Rice | nucleus | 43.9 | 43.45 |
| CDY42268 | Canola | mitochondrion, nucleus | 37.63 | 41.7 |
| CDY08432 | Canola | nucleus | 29.97 | 40.57 |
| OQU78230 | Sorghum | nucleus | 41.12 | 40.14 |
| HORVU1Hr1G067990.1 | Barley | nucleus | 41.81 | 38.34 |
| GSMUA_Achr4P00270_001 | Banana | mitochondrion | 34.49 | 37.36 |
| Zm00001d038557_P001 | Maize | golgi | 41.81 | 35.5 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.3.5.7.1.1 | GO:A0A078EI04 | InterPro:CBFA_NFYB_domain | EnsemblPlants:CDY00772 | ProteinID:CDY00772 |
| ProteinID:CDY00772.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 | EnsemblPlantsGene:GSBRNA2T00110656001 | InterPro:Histone-fold | InterPro:IPR009072 |
| PFAM:PF00808 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF70 | SUPFAM:SSF47113 | UniParc:UPI0004EE193B | SEG:seg |
Description
BnaC03g37560D
Coordinates
chrLK031921:+:1060971..1063140
Molecular Weight (calculated)
31878.1 Da
IEP (calculated)
4.685
GRAVY (calculated)
-0.898
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK TVSSLHLKNC VERYNVFDFL REVVSKVPDY GHAQGQGHGD
101: VTMEDRSISK RRKPTSDEVN DSDEESKKSK TQEMGNAKPS GRGSRGRGRG RGRGGRAARA AERENLNNRE MELESSMVEQ KPPQDSIQMH VSVSSPQEIE
201: KEDGIAASNE DTKQQLQTPK EGIDIDLNAE SLDLNETKPA PVAATDTAAA SEEYTCWSME LGTIDPAQFA SLGKRIDEDE EDYDEEG
101: VTMEDRSISK RRKPTSDEVN DSDEESKKSK TQEMGNAKPS GRGSRGRGRG RGRGGRAARA AERENLNNRE MELESSMVEQ KPPQDSIQMH VSVSSPQEIE
201: KEDGIAASNE DTKQQLQTPK EGIDIDLNAE SLDLNETKPA PVAATDTAAA SEEYTCWSME LGTIDPAQFA SLGKRIDEDE EDYDEEG
001: MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK TVSSLHLKHC VERYNVFDFL REVVSKVPDY GHSQGQGHGD
101: VTMDDRSISK RRKPISDEVN DSDEEYKKSK TQEIGSAKTS GRGGRGRGRG RGRGGRAAKA AEREGLNREM EVEAANSGQP PPEDNVKMHA SESSPQEDEK
201: KGIDGTAASN EDTKQHLQSP KEGIDFDLNA ESLDLNETKL APATGTTTTT TAATDSEEYS GWPMMDISKM DPAQLASLGK RIDEDEEDYD EEG
101: VTMDDRSISK RRKPISDEVN DSDEEYKKSK TQEIGSAKTS GRGGRGRGRG RGRGGRAAKA AEREGLNREM EVEAANSGQP PPEDNVKMHA SESSPQEDEK
201: KGIDGTAASN EDTKQHLQSP KEGIDFDLNA ESLDLNETKL APATGTTTTT TAATDSEEYS GWPMMDISKM DPAQLASLGK RIDEDEEDYD EEG
Arabidopsis Description
NF-YC11NF-YC11 [Source:UniProtKB/TrEMBL;Acc:A0A178VDL4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.