Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G12480.1 | CDX75855 | AT4G14540.1 | 21798944 |
| AT3G12480.1 | CDX82424 | AT4G14540.1 | 21798944 |
| AT3G12480.1 | CDY20167 | AT4G14540.1 | 21798944 |
| AT3G12480.1 | CDY21888 | AT4G14540.1 | 21798944 |
| AT3G12480.1 | CDY30123 | AT4G14540.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038724.1-P | Field mustard | nucleus | 96.19 | 95.53 |
| CDY50342 | Canola | nucleus | 92.73 | 91.47 |
| CDY00772 | Canola | nucleus | 87.54 | 88.15 |
| CDY00771 | Canola | nucleus | 87.2 | 87.8 |
| CDX73821 | Canola | nucleus | 86.85 | 87.46 |
| AT3G12480.1 | Thale cress | nucleus | 83.05 | 81.91 |
| CDX70004 | Canola | nucleus | 60.9 | 58.86 |
| CDX99011 | Canola | nucleus | 60.9 | 58.28 |
| KRH20611 | Soybean | nucleus | 51.56 | 51.92 |
| Solyc01g096710.2.1 | Tomato | nucleus | 48.1 | 50.36 |
| KRH13272 | Soybean | nucleus | 51.9 | 50.17 |
| PGSC0003DMT400008518 | Potato | nucleus | 47.75 | 50.0 |
| KRH56225 | Soybean | nucleus | 50.17 | 49.66 |
| VIT_13s0084g00040.t01 | Wine grape | nucleus | 53.98 | 47.85 |
| HORVU1Hr1G067880.1 | Barley | nucleus | 43.94 | 45.2 |
| TraesCS1B01G322000.1 | Wheat | nucleus | 42.91 | 43.82 |
| TraesCS1D01G310200.1 | Wheat | nucleus | 42.91 | 43.66 |
| TraesCS1A01G310700.1 | Wheat | nucleus | 42.56 | 43.46 |
| Os05t0494100-01 | Rice | nucleus | 43.25 | 43.1 |
| CDY42268 | Canola | mitochondrion, nucleus | 37.37 | 41.7 |
| CDY08432 | Canola | nucleus | 30.1 | 41.04 |
| OQU78230 | Sorghum | nucleus | 40.83 | 40.14 |
| HORVU1Hr1G067990.1 | Barley | nucleus | 42.21 | 38.98 |
| GSMUA_Achr4P00270_001 | Banana | mitochondrion | 34.6 | 37.74 |
| Zm00001d038557_P001 | Maize | golgi | 41.87 | 35.8 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.3.5.7.1.1 | GO:A0A078IKW1 | UniProt:A0A078IKW1 | InterPro:CBFA_NFYB_domain | EnsemblPlants:CDY50522 |
| ProteinID:CDY50522 | ProteinID:CDY50522.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 | EnsemblPlantsGene:GSBRNA2T00096944001 |
| InterPro:Histone-fold | InterPro:IPR009072 | PFAM:PF00808 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF70 | SUPFAM:SSF47113 |
| UniParc:UPI0004EEA3C6 | SEG:seg | : | : | : | : |
Description
BnaA01g30580DBnaA01g30580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IKW1]
Coordinates
chrLK032921:+:6281..8217
Molecular Weight (calculated)
31886.1 Da
IEP (calculated)
4.733
GRAVY (calculated)
-0.936
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK TVSSLHLKHC VERYNVFDFL REVVSKVPDY GQAQGQGHGD
101: VAMDDRTISK RRKPISDEVN DSDEENKKSK TQEVGNAKPS GRGSRGRGRG RGRGGRAAKA AERENLNREM ELETAMAEQP PPQDSSQMHV SVSSPQENEK
201: KDADGGIAAS NEDAKQQLQS PKEGIDFDLN AESLDLNETK PAPVAAADTA TTSDEYPGWP MELGKIDPTQ LASLGKRIDE EEEDYDEEG
101: VAMDDRTISK RRKPISDEVN DSDEENKKSK TQEVGNAKPS GRGSRGRGRG RGRGGRAAKA AERENLNREM ELETAMAEQP PPQDSSQMHV SVSSPQENEK
201: KDADGGIAAS NEDAKQQLQS PKEGIDFDLN AESLDLNETK PAPVAAADTA TTSDEYPGWP MELGKIDPTQ LASLGKRIDE EEEDYDEEG
001: MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK TVSSLHLKHC VERYNVFDFL REVVSKVPDY GHSQGQGHGD
101: VTMDDRSISK RRKPISDEVN DSDEEYKKSK TQEIGSAKTS GRGGRGRGRG RGRGGRAAKA AEREGLNREM EVEAANSGQP PPEDNVKMHA SESSPQEDEK
201: KGIDGTAASN EDTKQHLQSP KEGIDFDLNA ESLDLNETKL APATGTTTTT TAATDSEEYS GWPMMDISKM DPAQLASLGK RIDEDEEDYD EEG
101: VTMDDRSISK RRKPISDEVN DSDEEYKKSK TQEIGSAKTS GRGGRGRGRG RGRGGRAAKA AEREGLNREM EVEAANSGQP PPEDNVKMHA SESSPQEDEK
201: KGIDGTAASN EDTKQHLQSP KEGIDFDLNA ESLDLNETKL APATGTTTTT TAATDSEEYS GWPMMDISKM DPAQLASLGK RIDEDEEDYD EEG
Arabidopsis Description
NF-YC11NF-YC11 [Source:UniProtKB/TrEMBL;Acc:A0A178VDL4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.