Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50522 | Canola | nucleus | 81.91 | 83.05 |
| CDY00772 | Canola | nucleus | 80.2 | 81.88 |
| CDY00771 | Canola | nucleus | 79.86 | 81.53 |
| CDY50342 | Canola | nucleus | 81.23 | 81.23 |
| CDX73821 | Canola | nucleus | 78.84 | 80.49 |
| Bra038724.1-P | Field mustard | nucleus | 79.52 | 80.07 |
| KRH20611 | Soybean | nucleus | 52.22 | 53.31 |
| KRH56225 | Soybean | nucleus | 51.19 | 51.37 |
| KRH13272 | Soybean | nucleus | 51.88 | 50.84 |
| Bra034756.1-P | Field mustard | nucleus | 43.34 | 50.2 |
| Solyc01g096710.2.1 | Tomato | nucleus | 47.1 | 50.0 |
| PGSC0003DMT400008518 | Potato | nucleus | 46.76 | 49.64 |
| VIT_13s0084g00040.t01 | Wine grape | nucleus | 50.85 | 45.71 |
| HORVU1Hr1G067880.1 | Barley | nucleus | 42.32 | 44.13 |
| TraesCS1D01G310200.1 | Wheat | nucleus | 42.32 | 43.66 |
| TraesCS1A01G310700.1 | Wheat | nucleus | 41.98 | 43.46 |
| TraesCS1B01G322000.1 | Wheat | nucleus | 41.98 | 43.46 |
| Os05t0494100-01 | Rice | nucleus | 42.32 | 42.76 |
| CDY08432 | Canola | nucleus | 30.38 | 41.98 |
| AT5G19490.1 | Thale cress | nucleus | 37.54 | 41.67 |
| OQU78230 | Sorghum | nucleus | 40.27 | 40.14 |
| HORVU1Hr1G067990.1 | Barley | nucleus | 41.3 | 38.66 |
| GSMUA_Achr4P00270_001 | Banana | mitochondrion | 33.45 | 36.98 |
| Zm00001d038557_P001 | Maize | golgi | 41.64 | 36.09 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.3.5.7.1.1 | EntrezGene:820427 | UniProt:A0A178VDL4 | ProteinID:AEE75200.1 | EMBL:AF462841 |
| ArrayExpress:AT3G12480 | EnsemblPlantsGene:AT3G12480 | RefSeq:AT3G12480 | TAIR:AT3G12480 | RefSeq:AT3G12480-TAIR-G | EnsemblPlants:AT3G12480.1 |
| TAIR:AT3G12480.1 | EMBL:AY143847 | Unigene:At.48650 | ProteinID:BAB03155.1 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 |
| Symbol:NF-YC11 | RefSeq:NP_187854.2 | ProteinID:OAP03946.1 | PFAM:PF00808 | PO:PO:0000005 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF70 | UniProt:Q9LHG0 | SUPFAM:SSF47113 | UniParc:UPI00000AC035 |
| SEG:seg | : | : | : | : | : |
Description
NF-YC11NF-YC11 [Source:UniProtKB/TrEMBL;Acc:A0A178VDL4]
Coordinates
chr3:+:3957763..3960472
Molecular Weight (calculated)
32293.4 Da
IEP (calculated)
4.862
GRAVY (calculated)
-0.952
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK TVSSLHLKHC VERYNVFDFL REVVSKVPDY GHSQGQGHGD
101: VTMDDRSISK RRKPISDEVN DSDEEYKKSK TQEIGSAKTS GRGGRGRGRG RGRGGRAAKA AEREGLNREM EVEAANSGQP PPEDNVKMHA SESSPQEDEK
201: KGIDGTAASN EDTKQHLQSP KEGIDFDLNA ESLDLNETKL APATGTTTTT TAATDSEEYS GWPMMDISKM DPAQLASLGK RIDEDEEDYD EEG
101: VTMDDRSISK RRKPISDEVN DSDEEYKKSK TQEIGSAKTS GRGGRGRGRG RGRGGRAAKA AEREGLNREM EVEAANSGQP PPEDNVKMHA SESSPQEDEK
201: KGIDGTAASN EDTKQHLQSP KEGIDFDLNA ESLDLNETKL APATGTTTTT TAATDSEEYS GWPMMDISKM DPAQLASLGK RIDEDEEDYD EEG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.