Factsheet for TraesCS1B01G322000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73503	Soybean	cytosol	3.89	100.0
TraesCS1A01G310700.1	Wheat	nucleus	98.59	98.59
TraesCS1D01G310200.1	Wheat	nucleus	90.11	89.79
HORVU1Hr1G067880.1	Barley	nucleus	78.45	79.0
HORVU1Hr1G067990.1	Barley	nucleus	80.21	72.52
Os05t0494100-01	Rice	nucleus	71.02	69.31
OQU78230	Sorghum	nucleus	62.9	60.54
Zm00001d038557_P001	Maize	golgi	62.54	52.37
PGSC0003DMT400008518	Potato	nucleus	44.88	46.01
Solyc01g096710.2.1	Tomato	nucleus	44.52	45.65
PGSC0003DMT400070450	Potato	nucleus	46.64	45.05
KRH20611	Soybean	nucleus	45.58	44.95
CDX73821	Canola	nucleus	44.88	44.25
KRH56225	Soybean	nucleus	45.23	43.84
CDY00772	Canola	nucleus	44.17	43.55
CDY00771	Canola	nucleus	44.17	43.55
KRH14638	Soybean	nucleus	42.05	43.43
Solyc11g072150.1.1	Tomato	nucleus	46.64	43.28
KRH13272	Soybean	nucleus	45.58	43.14
CDY50522	Canola	nucleus	43.82	42.91
VIT_06s0009g02120.t01	Wine grape	nucleus	45.58	42.86
Bra038724.1-P	Field mustard	nucleus	43.82	42.61
KRH73504	Soybean	nucleus	40.28	42.54
VIT_13s0084g00040.t01	Wine grape	nucleus	48.76	42.33
CDX70004	Canola	nucleus	44.52	42.14
AT3G12480.1	Thale cress	nucleus	43.46	41.98
CDY50342	Canola	nucleus	43.46	41.98
Bra009295.1-P	Field mustard	nucleus	44.17	41.67
TraesCS4B01G161200.1	Wheat	nucleus	36.75	40.94
CDX99011	Canola	nucleus	43.46	40.73
CDY42268	Canola	mitochondrion, nucleus	37.1	40.54
GSMUA_Achr4P00270_001	Banana	mitochondrion	37.81	40.38
AT5G19490.1	Thale cress	nucleus	36.75	39.39
Bra034756.1-P	Field mustard	nucleus	24.38	27.27
CDY08432	Canola	nucleus	19.43	25.94

Protein Annotations

EnsemblPlants:TraesCS1B01G322000.1	EnsemblPlantsGene:TraesCS1B01G322000	Gene3D:1.10.20.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046982	InterPro:CBFA_NFYB_domain	InterPro:Histone-fold	InterPro:IPR009072	PANTHER:PTHR10252	PANTHER:PTHR10252:SF77
PFAM:PF00808	SEG:seg	SUPFAM:SSF47113	MapMan:15.3.5.7.1.1	:	:

Description

No Description!

Coordinates

chr1B:+:546528780..546533951

Molecular Weight (calculated)

31619.1 Da

IEP (calculated)

5.656

GRAVY (calculated)

-0.791

Length

283 amino acids

Sequence
(BLAST)

001: MRKKLDTRFP APRIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YNITVEKGVK TVSSSHLKQC IHSYDVYDFL KNVSSKVPDL GPPDSSVDDK
101: LGKRRKHGED ESEEESKRTR NEAACHTSNG RGRGRGRGRG RRAGRGAERE IEHHELGCAQ FSKPGHLKVE IGDVVLDTSE TKEHTPLSNA RASLRNIDLN
201: LDLADYEEDT VAPQVQPSAP VVTVAPQVQT SGPSVSQLKE EVETKDFLGW QMPEMNKMAM DPVQFALSSN HRLEEDEDYD NEE

Best Arabidopsis Sequence Match ( AT3G12480.1 )
(BLAST)

001: MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK TVSSLHLKHC VERYNVFDFL REVVSKVPDY GHSQGQGHGD
101: VTMDDRSISK RRKPISDEVN DSDEEYKKSK TQEIGSAKTS GRGGRGRGRG RGRGGRAAKA AEREGLNREM EVEAANSGQP PPEDNVKMHA SESSPQEDEK
201: KGIDGTAASN EDTKQHLQSP KEGIDFDLNA ESLDLNETKL APATGTTTTT TAATDSEEYS GWPMMDISKM DPAQLASLGK RIDEDEEDYD EEG

Arabidopsis Description

NF-YC11NF-YC11 [Source:UniProtKB/TrEMBL;Acc:A0A178VDL4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.