Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G034360.4 | Barley | nucleus | 94.88 | 94.51 |
| TraesCS4D01G158200.2 | Wheat | nucleus | 94.88 | 94.51 |
| TraesCS4A01G151500.1 | Wheat | nucleus | 93.7 | 93.33 |
| EES08635 | Sorghum | nucleus | 83.46 | 83.14 |
| Zm00001d007436_P002 | Maize | nucleus | 81.5 | 82.47 |
| Os11t0544700-01 | Rice | nucleus | 81.5 | 80.23 |
| Zm00001d052621_P002 | Maize | nucleus | 79.92 | 79.92 |
| KRH51962 | Soybean | golgi | 21.26 | 61.36 |
| GSMUA_Achr10P... | Banana | nucleus | 57.87 | 57.42 |
| GSMUA_Achr2P03550_001 | Banana | nucleus | 57.09 | 56.86 |
| GSMUA_Achr9P21090_001 | Banana | nucleus | 55.91 | 56.57 |
| TraesCS1B01G322000.1 | Wheat | nucleus | 40.94 | 36.75 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G161200.1 | EnsemblPlantsGene:TraesCS4B01G161200 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046982 | InterPro:CBFA_NFYB_domain | InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF72 |
| PFAM:PF00808 | SEG:seg | SUPFAM:SSF47113 | MapMan:15.3.5.7.1.1 | : | : |
Description
No Description!
Coordinates
chr4B:-:316654368..316664398
Molecular Weight (calculated)
28038.2 Da
IEP (calculated)
6.956
GRAVY (calculated)
-0.686
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKKLGTRFP AARIKKIMQA DEDVGKIALA VPVLVSRALE LFLQDLIDRS YKITLQSGAK TLNSFHLKQC VKRYSSFDFL TEIVNKVPDL GGGESCGDER
101: GLPRRRKFSN GSDPENEEPR SSKMPIRSLN TSPRGRGRGR GRGRGRPPTK RKEIGYVQFE DESSMFAEQS EPLPGDEIVP ETNRGNEIIP QSSHPLVEAP
201: SVVTPAVISK VEKATNHQPD LPMPDAIGGI GVGPSSFGHL TVQVDEEEDY DNED
101: GLPRRRKFSN GSDPENEEPR SSKMPIRSLN TSPRGRGRGR GRGRGRPPTK RKEIGYVQFE DESSMFAEQS EPLPGDEIVP ETNRGNEIIP QSSHPLVEAP
201: SVVTPAVISK VEKATNHQPD LPMPDAIGGI GVGPSSFGHL TVQVDEEEDY DNED
001: MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK TVSSLHLKHC VERYNVFDFL REVVSKVPDY GHSQGQGHGD
101: VTMDDRSISK RRKPISDEVN DSDEEYKKSK TQEIGSAKTS GRGGRGRGRG RGRGGRAAKA AEREGLNREM EVEAANSGQP PPEDNVKMHA SESSPQEDEK
201: KGIDGTAASN EDTKQHLQSP KEGIDFDLNA ESLDLNETKL APATGTTTTT TAATDSEEYS GWPMMDISKM DPAQLASLGK RIDEDEEDYD EEG
101: VTMDDRSISK RRKPISDEVN DSDEEYKKSK TQEIGSAKTS GRGGRGRGRG RGRGGRAAKA AEREGLNREM EVEAANSGQP PPEDNVKMHA SESSPQEDEK
201: KGIDGTAASN EDTKQHLQSP KEGIDFDLNA ESLDLNETKL APATGTTTTT TAATDSEEYS GWPMMDISKM DPAQLASLGK RIDEDEEDYD EEG
Arabidopsis Description
NF-YC11NF-YC11 [Source:UniProtKB/TrEMBL;Acc:A0A178VDL4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.