Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G158200.2 | Wheat | nucleus | 96.86 | 96.86 |
| HORVU4Hr1G034360.4 | Barley | nucleus | 95.29 | 95.29 |
| TraesCS4B01G161200.1 | Wheat | nucleus | 93.33 | 93.7 |
| EES08635 | Sorghum | nucleus | 85.1 | 85.1 |
| Zm00001d007436_P002 | Maize | nucleus | 82.75 | 84.06 |
| Zm00001d052621_P002 | Maize | nucleus | 81.18 | 81.5 |
| Os11t0544700-01 | Rice | nucleus | 81.18 | 80.23 |
| KRH51962 | Soybean | golgi | 21.18 | 61.36 |
| GSMUA_Achr10P... | Banana | nucleus | 57.25 | 57.03 |
| GSMUA_Achr2P03550_001 | Banana | nucleus | 56.47 | 56.47 |
| GSMUA_Achr9P21090_001 | Banana | nucleus | 55.29 | 56.18 |
| TraesCS1A01G310700.1 | Wheat | nucleus | 41.18 | 37.1 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G151500.1 | EnsemblPlantsGene:TraesCS4A01G151500 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046982 | InterPro:CBFA_NFYB_domain | InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF72 |
| PFAM:PF00808 | SEG:seg | SUPFAM:SSF47113 | MapMan:15.3.5.7.1.1 | : | : |
Description
No Description!
Coordinates
chr4A:-:306315444..306320631
Molecular Weight (calculated)
28128.2 Da
IEP (calculated)
6.377
GRAVY (calculated)
-0.707
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKKLGTRFP AARIKKIMQA DEDVGKIALA VPVLVSRALE LFLQDLIDHS YKITLQSGAK TLNSFHLKQC VKRYSSFDFL TEIVNKVPDL GGGESCGDER
101: GLPRRRKFSN GSDPENEEPR SSKMPIRSLN TSPRGRGRGR GRGRGRPPTK RKEIGYVQFE DESSMFAEQS EPLPGDEIVP ETNRGNESIP QSSHPLVEAP
201: SAMTPAVISK VEEASTNHQP DWPMPDAIGG IGVGPSSFGH LTVQVDEVED YDNED
101: GLPRRRKFSN GSDPENEEPR SSKMPIRSLN TSPRGRGRGR GRGRGRPPTK RKEIGYVQFE DESSMFAEQS EPLPGDEIVP ETNRGNESIP QSSHPLVEAP
201: SAMTPAVISK VEEASTNHQP DWPMPDAIGG IGVGPSSFGH LTVQVDEVED YDNED
001: MKKKLQTRFP ATRIKKIMQT DEEVGKIAMA VPLLVSKALE LFLQDLCNHT YDVTLSRGAK TVNAFHLKQC VQATNVFDFL RDTVAKVPDL GGSDTEDQSA
101: TKRRKVVDGS SCNDEDMIKT TQMHEVKHTS CGRGRRGRGR GRSSGRTGSG LSLKFEEDLE DGSPESSRTP SPENGSLSHD DTSWKKVASH NNHHSSNSEV
201: KVRNFDLNVE LDENGDNATW LETQLERSPD YPLEINEMKI DPDDQQQASA SDEEDYDEES IDQE
101: TKRRKVVDGS SCNDEDMIKT TQMHEVKHTS CGRGRRGRGR GRSSGRTGSG LSLKFEEDLE DGSPESSRTP SPENGSLSHD DTSWKKVASH NNHHSSNSEV
201: KVRNFDLNVE LDENGDNATW LETQLERSPD YPLEINEMKI DPDDQQQASA SDEEDYDEES IDQE
Arabidopsis Description
Histone superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K162]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.