CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	golgi
PProwler:	mitochondrion
TargetP:	secretory
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007436_P002	Maize	nucleus	63.64	22.31
Os11t0544700-01	Rice	nucleus	64.77	22.09
EES08635	Sorghum	nucleus	63.64	21.96
KRH20611	Soybean	nucleus	71.59	21.95
GSMUA_Achr9P21090_001	Banana	nucleus	62.5	21.91
Zm00001d052621_P002	Maize	nucleus	62.5	21.65
HORVU4Hr1G034360.4	Barley	nucleus	62.5	21.57
GSMUA_Achr10P...	Banana	nucleus	62.5	21.48
TraesCS4B01G161200.1	Wheat	nucleus	61.36	21.26
TraesCS4A01G151500.1	Wheat	nucleus	61.36	21.18
TraesCS4D01G158200.2	Wheat	nucleus	61.36	21.18
GSMUA_Achr2P03550_001	Banana	nucleus	61.36	21.18
KRH13272	Soybean	nucleus	71.59	21.07
KRH56225	Soybean	nucleus	69.32	20.89
KRH73504	Soybean	nucleus	62.5	20.52
KRH14638	Soybean	nucleus	62.5	20.07
KRH73503	Soybean	cytosol	0.0	0.0

Protein Annotations

EMBL:ACUP02003402	EnsemblPlants:KRH51962	EnsemblPlantsGene:GLYMA_06G038200	Gene3D:1.10.20.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046982	InterPro:CBFA_NFYB_domain	InterPro:Histone-fold	InterPro:IPR009072	PANTHER:PTHR10252
PANTHER:PTHR10252:SF70	PFAM:PF00808	ProteinID:KRH51962	ProteinID:KRH51962.1	SUPFAM:SSF47113	UniParc:UPI0006EDFE48
UniProt:A0A0R0JBL0	MapMan:15.3.5.7.1.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:2914749..2915579

Molecular Weight (calculated)

10251.6 Da

IEP (calculated)

9.119

GRAVY (calculated)

-0.193

Length

88 amino acids

Sequence
(BLAST)

1: ARIKKIMQAD EDVGKIALAV PVLVSKALEL FLQDLCDRTY EITLQRGAKT MNSLHLNSET IYNGFPIIRE RIKDLQDFQP NWLIMYRK

Best Arabidopsis Sequence Match ( AT3G12480.1 )
(BLAST)

001: MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK TVSSLHLKHC VERYNVFDFL REVVSKVPDY GHSQGQGHGD
101: VTMDDRSISK RRKPISDEVN DSDEEYKKSK TQEIGSAKTS GRGGRGRGRG RGRGGRAAKA AEREGLNREM EVEAANSGQP PPEDNVKMHA SESSPQEDEK
201: KGIDGTAASN EDTKQHLQSP KEGIDFDLNA ESLDLNETKL APATGTTTTT TAATDSEEYS GWPMMDISKM DPAQLASLGK RIDEDEEDYD EEG

Arabidopsis Description

NF-YC11NF-YC11 [Source:UniProtKB/TrEMBL;Acc:A0A178VDL4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.