CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73503	Soybean	cytosol	3.83	100.0
KRH13272	Soybean	nucleus	88.5	84.95
KRH56225	Soybean	nucleus	75.26	73.97
KRH51962	Soybean	golgi	21.95	71.59
KRH14638	Soybean	nucleus	53.31	55.84
Solyc01g096710.2.1	Tomato	nucleus	53.66	55.8
PGSC0003DMT400008518	Potato	nucleus	52.96	55.07
KRH73504	Soybean	nucleus	50.87	54.48
VIT_13s0084g00040.t01	Wine grape	nucleus	61.32	53.99
AT3G12480.1	Thale cress	nucleus	53.31	52.22
CDY50342	Canola	nucleus	53.31	52.22
CDX99011	Canola	nucleus	54.36	51.66
CDX73821	Canola	nucleus	51.57	51.57
CDY50522	Canola	nucleus	51.92	51.56
CDX70004	Canola	nucleus	53.66	51.51
Bra009295.1-P	Field mustard	nucleus	53.66	51.33
CDY00772	Canola	nucleus	51.22	51.22
CDY00771	Canola	nucleus	51.22	51.22
Bra038724.1-P	Field mustard	nucleus	51.22	50.52
Os05t0494100-01	Rice	nucleus	48.08	47.59
HORVU1Hr1G067880.1	Barley	nucleus	44.95	45.91
TraesCS1B01G322000.1	Wheat	nucleus	44.95	45.58
TraesCS1A01G310700.1	Wheat	nucleus	44.6	45.23
TraesCS1D01G310200.1	Wheat	nucleus	44.6	45.07
OQU78230	Sorghum	nucleus	43.9	42.86
HORVU1Hr1G067990.1	Barley	nucleus	44.25	40.58
Zm00001d038557_P001	Maize	golgi	45.64	38.76
GSMUA_Achr4P00270_001	Banana	mitochondrion	35.54	38.49
CDY08432	Canola	nucleus	25.09	33.96
Bra034756.1-P	Field mustard	nucleus	28.22	32.02

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100814712	MapMan:15.3.5.7.1.1	EMBL:ACUP02008281	InterPro:CBFA_NFYB_domain	EnsemblPlantsGene:GLYMA_13G189400
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0046982	InterPro:Histone-fold	UniProt:I1M0K0	InterPro:IPR009072	EnsemblPlants:KRH20611
ProteinID:KRH20611	ProteinID:KRH20611.1	PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF70	SUPFAM:SSF47113
UniParc:UPI00023CE96C	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:30286518..30295433

Molecular Weight (calculated)

31680.7 Da

IEP (calculated)

5.063

GRAVY (calculated)

-0.900

Length

287 amino acids

Sequence
(BLAST)

001: MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK TMNSLHLKHC VQSYNVFDFL RDVVSRVPDY SHGHGHAEAG
101: PDDRAIAKRR KAVGDDGNDS DEEAKRSKMH ELGHTGSTGR GRGRGRGRGR GRGRPPLNRE IYHQDAESEP CTSVQPSNPQ NTNTSVAMDS GSESKEIPKE
201: QNIAVPVEST DSLRNIDLNA ITNENDDKKA SAAADASVPE PPTESKHEEI PGWSLSDVDK MAIDSLQLAQ LGRPLEEDEE DYDEEEG

Best Arabidopsis Sequence Match ( AT3G12480.1 )
(BLAST)

001: MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK TVSSLHLKHC VERYNVFDFL REVVSKVPDY GHSQGQGHGD
101: VTMDDRSISK RRKPISDEVN DSDEEYKKSK TQEIGSAKTS GRGGRGRGRG RGRGGRAAKA AEREGLNREM EVEAANSGQP PPEDNVKMHA SESSPQEDEK
201: KGIDGTAASN EDTKQHLQSP KEGIDFDLNA ESLDLNETKL APATGTTTTT TAATDSEEYS GWPMMDISKM DPAQLASLGK RIDEDEEDYD EEG

Arabidopsis Description

NF-YC11NF-YC11 [Source:UniProtKB/TrEMBL;Acc:A0A178VDL4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.