CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75855
CDX82424
CDY20167
CDY21888
CDY30123

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12480.1	CDX75855	AT4G14540.1	21798944
AT3G12480.1	CDX82424	AT4G14540.1	21798944
AT3G12480.1	CDY20167	AT4G14540.1	21798944
AT3G12480.1	CDY21888	AT4G14540.1	21798944
AT3G12480.1	CDY30123	AT4G14540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034756.1-P	Field mustard	nucleus	38.68	32.41
CDX73821	Canola	nucleus	41.51	30.66
AT3G12480.1	Thale cress	nucleus	41.98	30.38
CDY50522	Canola	nucleus	41.04	30.1
CDY50342	Canola	nucleus	41.51	30.03
CDY00772	Canola	nucleus	40.57	29.97
CDY00771	Canola	nucleus	40.09	29.62
CDX70004	Canola	nucleus	39.15	27.76
CDX99011	Canola	nucleus	38.21	26.82
KRH20611	Soybean	nucleus	33.96	25.09
PGSC0003DMT400008518	Potato	nucleus	32.08	24.64
KRH13272	Soybean	nucleus	34.43	24.41
Solyc01g096710.2.1	Tomato	nucleus	31.6	24.28
KRH56225	Soybean	nucleus	33.02	23.97
VIT_13s0084g00040.t01	Wine grape	nucleus	33.96	22.09
CDY42268	Canola	mitochondrion, nucleus	25.94	21.24
GSMUA_Achr4P00270_001	Banana	mitochondrion	25.47	20.38
OQU78230	Sorghum	nucleus	27.36	19.73
HORVU1Hr1G067880.1	Barley	nucleus	25.94	19.57
TraesCS1A01G310700.1	Wheat	nucleus	25.94	19.43
TraesCS1B01G322000.1	Wheat	nucleus	25.94	19.43
TraesCS1D01G310200.1	Wheat	nucleus	25.94	19.37
Os05t0494100-01	Rice	nucleus	25.94	18.97
HORVU1Hr1G067990.1	Barley	nucleus	25.94	17.57
Zm00001d038557_P001	Maize	golgi	27.83	17.46

Protein Annotations

EnsemblPlants:CDY08432	EnsemblPlantsGene:GSBRNA2T00000193001	Gene3D:1.10.20.10	GO:A0A078F5Q3	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	PANTHER:PTHR10252	PANTHER:PTHR10252:SF70
ProteinID:CDY08432	ProteinID:CDY08432.1	SEG:seg	SUPFAM:SSF47113	UniParc:UPI0004EDFD3D	UniProt:A0A078F5Q3
MapMan:15.3.5.7.1.1	:	:	:	:	:

Description

BnaA05g26680DBnaA05g26680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F5Q3]

Coordinates

chrLK031986:-:162910..167501

Molecular Weight (calculated)

24286.5 Da

IEP (calculated)

7.530

GRAVY (calculated)

-0.874

Length

212 amino acids

Sequence
(BLAST)

001: MEMILPSRVA LLPSHTEQRR KGQSLWNCLF FQELCDRTYE ITLERGAKTV SSLHLKHCVE TYDVFDFMRE VVSKVPDYGQ AQGQGQGNAT MYDRSISKKR
101: CEMPISDEVN DSDEEYKKSK TVSLSSSYKR WGMLSPVAGV VEGDDEKEVV EDELLDRHGG TATSSRQHPG GRVSVITTRE REEGCRRLHC RTKRRHQATT
201: SESKRWHCSD SH

Best Arabidopsis Sequence Match ( AT3G12480.1 )
(BLAST)

001: MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK TVSSLHLKHC VERYNVFDFL REVVSKVPDY GHSQGQGHGD
101: VTMDDRSISK RRKPISDEVN DSDEEYKKSK TQEIGSAKTS GRGGRGRGRG RGRGGRAAKA AEREGLNREM EVEAANSGQP PPEDNVKMHA SESSPQEDEK
201: KGIDGTAASN EDTKQHLQSP KEGIDFDLNA ESLDLNETKL APATGTTTTT TAATDSEEYS GWPMMDISKM DPAQLASLGK RIDEDEEDYD EEG

Arabidopsis Description

NF-YC11NF-YC11 [Source:UniProtKB/TrEMBL;Acc:A0A178VDL4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.