CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70004	Canola	nucleus	90.73	91.64
Bra009295.1-P	Field mustard	nucleus	76.82	77.33
CDY50522	Canola	nucleus	58.28	60.9
CDX73821	Canola	nucleus	56.95	59.93
CDY00771	Canola	nucleus	56.95	59.93
CDY50342	Canola	nucleus	57.95	59.73
CDY00772	Canola	nucleus	56.62	59.58
KRH20611	Soybean	nucleus	51.66	54.36
KRH56225	Soybean	nucleus	52.32	54.11
KRH13272	Soybean	nucleus	52.32	52.84
Solyc01g096710.2.1	Tomato	nucleus	46.03	50.36
PGSC0003DMT400008518	Potato	nucleus	45.7	50.0
VIT_13s0084g00040.t01	Wine grape	nucleus	50.99	47.24
HORVU1Hr1G067880.1	Barley	nucleus	43.38	46.62
OQU78230	Sorghum	nucleus	43.05	44.22
Os05t0494100-01	Rice	nucleus	42.38	44.14
TraesCS1D01G310200.1	Wheat	nucleus	41.39	44.01
TraesCS1A01G310700.1	Wheat	nucleus	40.73	43.46
TraesCS1B01G322000.1	Wheat	nucleus	40.73	43.46
CDY42268	Canola	mitochondrion, nucleus	36.42	42.47
HORVU1Hr1G067990.1	Barley	nucleus	42.38	40.89
CDY08432	Canola	nucleus	26.82	38.21
GSMUA_Achr4P00270_001	Banana	mitochondrion	33.44	38.11
Zm00001d038557_P001	Maize	golgi	41.39	36.98

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.5.7.1.1	GO:A0A078ED14	InterPro:CBFA_NFYB_domain	EnsemblPlants:CDX99011	ProteinID:CDX99011
ProteinID:CDX99011.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982	EnsemblPlantsGene:GSBRNA2T00107134001	InterPro:Histone-fold
InterPro:IPR009072	PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF70	SUPFAM:SSF47113	UniParc:UPI0004EE0431
SEG:seg	:	:	:	:	:

Description

BnaC09g48240D

Coordinates

chrLK031907:+:1125546..1127737

Molecular Weight (calculated)

33391.1 Da

IEP (calculated)

4.785

GRAVY (calculated)

-0.853

Length

302 amino acids

Sequence
(BLAST)

001: MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK TVSSLHLKNC VETYNVFDFL REVVSKVPDY GHGHGHGHGL
101: GNGQADATMD DRTISKRRKP TGDEANDSDE EIKKTKVHET GQVGPSGRGR GRGRGRGRGR SAKTAEKELL QRGMETEPTI LSAPPQLITH DGITMLPSQP
201: QQDTEKEVDD MSKQELQSPK AGNDDTNSGL GRDFDLNTQT LEVETKPPVV VVTASTETTK PEEYPGWSIS DIGNMDPMQL ASMGKRLDEE EEEEEDYDEV
301: DA

Best Arabidopsis Sequence Match ( AT5G19490.1 )
(BLAST)

001: MKKKLQTRFP ATRIKKIMQT DEEVGKIAMA VPLLVSKALE LFLQDLCNHT YDVTLSRGAK TVNAFHLKQC VQATNVFDFL RDTVAKVPDL GGSDTEDQSA
101: TKRRKVVDGS SCNDEDMIKT TQMHEVKHTS CGRGRRGRGR GRSSGRTGSG LSLKFEEDLE DGSPESSRTP SPENGSLSHD DTSWKKVASH NNHHSSNSEV
201: KVRNFDLNVE LDENGDNATW LETQLERSPD YPLEINEMKI DPDDQQQASA SDEEDYDEES IDQE

Arabidopsis Description

Histone superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K162]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.