Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70004 | Canola | nucleus | 78.0 | 78.26 |
| CDX99011 | Canola | nucleus | 77.33 | 76.82 |
| Bra038724.1-P | Field mustard | nucleus | 55.33 | 57.04 |
| KRH56225 | Soybean | nucleus | 54.0 | 55.48 |
| KRH20611 | Soybean | nucleus | 51.33 | 53.66 |
| KRH13272 | Soybean | nucleus | 52.67 | 52.84 |
| Solyc01g096710.2.1 | Tomato | nucleus | 45.67 | 49.64 |
| PGSC0003DMT400008518 | Potato | nucleus | 45.33 | 49.28 |
| VIT_13s0084g00040.t01 | Wine grape | nucleus | 51.0 | 46.93 |
| TraesCS1B01G322000.1 | Wheat | nucleus | 41.67 | 44.17 |
| HORVU1Hr1G067880.1 | Barley | nucleus | 41.33 | 44.13 |
| TraesCS1A01G310700.1 | Wheat | nucleus | 41.33 | 43.82 |
| TraesCS1D01G310200.1 | Wheat | nucleus | 40.67 | 42.96 |
| Os05t0494100-01 | Rice | nucleus | 41.33 | 42.76 |
| OQU78230 | Sorghum | nucleus | 41.33 | 42.18 |
| HORVU1Hr1G067990.1 | Barley | nucleus | 41.33 | 39.62 |
| Bra034756.1-P | Field mustard | nucleus | 32.67 | 38.74 |
| Zm00001d038557_P001 | Maize | golgi | 41.0 | 36.39 |
| GSMUA_Achr4P00270_001 | Banana | mitochondrion | 32.0 | 36.23 |
Protein Annotations
| EnsemblPlants:Bra009295.1 | EnsemblPlants:Bra009295.1-P | EnsemblPlantsGene:Bra009295 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 |
| InterPro:CBFA_NFYB_domain | InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF70 | PFAM:PF00808 |
| SEG:seg | SUPFAM:SSF47113 | UniParc:UPI0002543981 | UniProt:M4CYJ8 | MapMan:15.3.5.7.1.1 | : |
Description
AT3G12480 (E=5e-077) NF-YC11 | NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11); DNA binding / transcription factor
Coordinates
chrA10:+:16030942..16032579
Molecular Weight (calculated)
33353.1 Da
IEP (calculated)
4.909
GRAVY (calculated)
-0.905
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK TVSSLHLKNC VETYNVFDFL REVVSKVPDY GHGHGHGHGN
101: GQSDATMDDR TISKRRKPTG DEANDSDEEI KKTKVQETGQ VGPSGRGRGR GRGRGRGRSA KTAEKELLQR EMETEPTILS APPQLTQDGI TMLPSPTQQQ
201: DTEKKDVDDM SKQELQSPKA GNYDTNSGLG RDFDLNTQTL EVETKPPVVV VTTASRETTK PEEYPGWSIS DIGNMDPMQL ASMGKRLDEE EEEDYDEVEA
101: GQSDATMDDR TISKRRKPTG DEANDSDEEI KKTKVQETGQ VGPSGRGRGR GRGRGRGRSA KTAEKELLQR EMETEPTILS APPQLTQDGI TMLPSPTQQQ
201: DTEKKDVDDM SKQELQSPKA GNYDTNSGLG RDFDLNTQTL EVETKPPVVV VTTASRETTK PEEYPGWSIS DIGNMDPMQL ASMGKRLDEE EEEDYDEVEA
001: MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK TVSSLHLKHC VERYNVFDFL REVVSKVPDY GHSQGQGHGD
101: VTMDDRSISK RRKPISDEVN DSDEEYKKSK TQEIGSAKTS GRGGRGRGRG RGRGGRAAKA AEREGLNREM EVEAANSGQP PPEDNVKMHA SESSPQEDEK
201: KGIDGTAASN EDTKQHLQSP KEGIDFDLNA ESLDLNETKL APATGTTTTT TAATDSEEYS GWPMMDISKM DPAQLASLGK RIDEDEEDYD EEG
101: VTMDDRSISK RRKPISDEVN DSDEEYKKSK TQEIGSAKTS GRGGRGRGRG RGRGGRAAKA AEREGLNREM EVEAANSGQP PPEDNVKMHA SESSPQEDEK
201: KGIDGTAASN EDTKQHLQSP KEGIDFDLNA ESLDLNETKL APATGTTTTT TAATDSEEYS GWPMMDISKM DPAQLASLGK RIDEDEEDYD EEG
Arabidopsis Description
NF-YC11NF-YC11 [Source:UniProtKB/TrEMBL;Acc:A0A178VDL4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.