Factsheet for Bra034756.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001615.1-P
Bra021147.1-P
Bra027199.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12480.1	Bra001615.1-P	AT4G14540.1	21798944
AT3G12480.1	Bra021147.1-P	AT4G14540.1	21798944
AT3G12480.1	Bra027199.1-P	AT4G14540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038724.1-P	Field mustard	nucleus	54.15	47.08
AT3G12480.1	Thale cress	nucleus	50.2	43.34
CDY08432	Canola	nucleus	32.41	38.68
Bra009295.1-P	Field mustard	nucleus	38.74	32.67
KRH20611	Soybean	nucleus	32.02	28.22
Solyc01g096710.2.1	Tomato	nucleus	29.64	27.17
PGSC0003DMT400008518	Potato	nucleus	29.64	27.17
KRH56225	Soybean	nucleus	30.83	26.71
KRH13272	Soybean	nucleus	29.64	25.08
TraesCS1A01G310700.1	Wheat	nucleus	27.27	24.38
TraesCS1B01G322000.1	Wheat	nucleus	27.27	24.38
TraesCS1D01G310200.1	Wheat	nucleus	27.27	24.3
VIT_13s0084g00040.t01	Wine grape	nucleus	31.23	24.23
HORVU1Hr1G067880.1	Barley	nucleus	26.88	24.2
Os05t0494100-01	Rice	nucleus	26.09	22.76
GSMUA_Achr4P00270_001	Banana	mitochondrion	22.92	21.89
OQU78230	Sorghum	nucleus	24.9	21.43
HORVU1Hr1G067990.1	Barley	nucleus	26.48	21.41
Zm00001d038557_P001	Maize	golgi	27.27	20.41

Protein Annotations

EnsemblPlants:Bra034756.1	EnsemblPlants:Bra034756.1-P	EnsemblPlantsGene:Bra034756	Gene3D:1.10.20.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982
InterPro:CBFA_NFYB_domain	InterPro:Histone-fold	InterPro:IPR009072	PANTHER:PTHR10252	PANTHER:PTHR10252:SF70	PFAM:PF00808
SEG:seg	SUPFAM:SSF47113	UniParc:UPI0002547391	UniProt:M4F111	MapMan:15.3.5.7.1.1	:

Description

AT3G12480 (E=2e-058) NF-YC11 | NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11); DNA binding / transcription factor

Coordinates

chrA05:-:21291398..21294093

Molecular Weight (calculated)

28213.9 Da

IEP (calculated)

5.122

GRAVY (calculated)

-0.952

Length

253 amino acids

Sequence
(BLAST)

001: MEMILPSHTE QRRKAKSLEL FFQELCDRTY EITLEKGAKT VSSLHLKHCV ETYDVFDFMS EVVSKVPDYG QAKGQGQGNA TMYDRSISKK RCEMQKVGNA
101: KPSGRGSRGR GLGRGRGGRV ARTAERENLN RQMELETAMV EPPPPQDSIQ VDVSVSSQQD NEKKDVDGGI AEPNEDTKQQ FESPKECIAA SNEDTKQQLQ
201: SPKEGIDIDL NAESHDLNET KLAPLADTDT ASEEYPGWPI NGQNRSSTLC KFR

Best Arabidopsis Sequence Match ( AT3G12480.1 )
(BLAST)

001: MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK TVSSLHLKHC VERYNVFDFL REVVSKVPDY GHSQGQGHGD
101: VTMDDRSISK RRKPISDEVN DSDEEYKKSK TQEIGSAKTS GRGGRGRGRG RGRGGRAAKA AEREGLNREM EVEAANSGQP PPEDNVKMHA SESSPQEDEK
201: KGIDGTAASN EDTKQHLQSP KEGIDFDLNA ESLDLNETKL APATGTTTTT TAATDSEEYS GWPMMDISKM DPAQLASLGK RIDEDEEDYD EEG

Arabidopsis Description

NF-YC11NF-YC11 [Source:UniProtKB/TrEMBL;Acc:A0A178VDL4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.