CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73503	Soybean	cytosol	3.47	81.82
AT5G19490.1	Thale cress	nucleus	64.09	62.88
KRH14638	Soybean	nucleus	49.03	46.35
KRH73504	Soybean	nucleus	47.1	45.52
VIT_06s0009g02120.t01	Wine grape	nucleus	50.58	43.52
Os05t0494100-01	Rice	nucleus	45.95	41.03
PGSC0003DMT400070450	Potato	nucleus	46.33	40.96
Solyc11g072150.1.1	Tomato	nucleus	45.95	39.02
HORVU1Hr1G067880.1	Barley	nucleus	40.93	37.72
CDY00772	Canola	nucleus	41.7	37.63
CDY00771	Canola	nucleus	41.7	37.63
CDX73821	Canola	nucleus	41.7	37.63
CDY50522	Canola	nucleus	41.7	37.37
TraesCS1B01G322000.1	Wheat	nucleus	40.54	37.1
TraesCS1A01G310700.1	Wheat	nucleus	40.54	37.1
TraesCS1D01G310200.1	Wheat	nucleus	40.54	36.97
CDY50342	Canola	nucleus	41.7	36.86
CDX70004	Canola	nucleus	42.47	36.79
CDX99011	Canola	nucleus	42.47	36.42
OQU78230	Sorghum	nucleus	40.93	36.05
GSMUA_Achr4P00270_001	Banana	mitochondrion	36.68	35.85
HORVU1Hr1G067990.1	Barley	nucleus	41.31	34.19
Zm00001d038557_P001	Maize	golgi	41.31	31.66
CDY08432	Canola	nucleus	21.24	25.94

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.5.7.1.1	GO:A0A078HZR2	UniProt:A0A078HZR2	InterPro:CBFA_NFYB_domain	EnsemblPlants:CDY42268
ProteinID:CDY42268	ProteinID:CDY42268.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982	EnsemblPlantsGene:GSBRNA2T00074505001	InterPro:Histone-fold
InterPro:IPR009072	PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF77	SUPFAM:SSF47113	UniParc:UPI0004EE4862
SEG:seg	:	:	:	:	:

Description

BnaC02g08740DBnaC02g08740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZR2]

Coordinates

chrLK032520:-:20689..22115

Molecular Weight (calculated)

28834.6 Da

IEP (calculated)

5.451

GRAVY (calculated)

-0.898

Length

259 amino acids

Sequence
(BLAST)

001: MKKKLQTRFP ATRIKKIMQT DEDVGKIAMA VPLLVSKALE LFLQDLCNHT YDVTLSRGAK TLNSVHLKQC VHACNVFDFL RDVVSKVPDL GGSEGEDRPP
101: TKRRKLVDKS ISNDKDMKTT DMVTSQTDFA KHSGGGGGRG RGQGGGRMGN DQSLKFEDDS PEGSKSPSPE NWSLSHEAAP WKKAASHKNN HRNTELKVRD
201: FDLNVELDEN GEFATSPERG IEGRPGWPLF GINDMKIDSD QREVSAEEED YDEESIDQD

Best Arabidopsis Sequence Match ( AT5G19490.1 )
(BLAST)

001: MKKKLQTRFP ATRIKKIMQT DEEVGKIAMA VPLLVSKALE LFLQDLCNHT YDVTLSRGAK TVNAFHLKQC VQATNVFDFL RDTVAKVPDL GGSDTEDQSA
101: TKRRKVVDGS SCNDEDMIKT TQMHEVKHTS CGRGRRGRGR GRSSGRTGSG LSLKFEEDLE DGSPESSRTP SPENGSLSHD DTSWKKVASH NNHHSSNSEV
201: KVRNFDLNVE LDENGDNATW LETQLERSPD YPLEINEMKI DPDDQQQASA SDEEDYDEES IDQE

Arabidopsis Description

Histone superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K162]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.