Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14540.1 | CDX93603 | AT1G07980.1 | 21798944 |
| AT4G14540.1 | CDX95106 | AT1G07980.1 | 21798944 |
| AT4G14540.1 | CDY06291 | AT1G07980.1 | 21798944 |
| AT4G14540.1 | CDY22709 | AT1G07980.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21888 | Canola | nucleus | 98.73 | 99.36 |
| Bra021147.1-P | Field mustard | nucleus | 97.47 | 98.09 |
| CDY30123 | Canola | nucleus | 94.94 | 90.91 |
| AT4G14540.1 | Thale cress | nucleus | 84.81 | 83.23 |
| CDX82424 | Canola | nucleus | 93.67 | 78.31 |
| CDX75855 | Canola | nucleus | 91.77 | 77.96 |
| Solyc12g006120.1.1 | Tomato | nucleus | 78.48 | 61.39 |
| CDX74880 | Canola | nucleus | 54.43 | 60.56 |
| CDY41061 | Canola | nucleus | 69.62 | 59.78 |
| CDY28916 | Canola | nucleus | 70.25 | 59.68 |
| CDY40552 | Canola | nucleus | 69.62 | 59.46 |
| CDY25955 | Canola | nucleus | 70.25 | 59.36 |
| PGSC0003DMT400010977 | Potato | nucleus | 71.52 | 55.66 |
| CDY18462 | Canola | nucleus | 59.49 | 53.71 |
| CDY07691 | Canola | nucleus | 55.06 | 52.41 |
| CDX95014 | Canola | nucleus | 43.67 | 52.27 |
| CDY14422 | Canola | nucleus | 53.16 | 51.22 |
| CDY72254 | Canola | nucleus | 58.23 | 49.46 |
| CDY18460 | Canola | nucleus | 59.49 | 48.45 |
| CDX83320 | Canola | nucleus | 47.47 | 48.08 |
| CDY53021 | Canola | nucleus | 46.2 | 47.1 |
| CDX77785 | Canola | cytosol | 38.61 | 45.52 |
| CDX93117 | Canola | nucleus | 57.59 | 43.54 |
| CDX89608 | Canola | nucleus | 57.59 | 43.54 |
| CDX79714 | Canola | nucleus | 60.76 | 43.24 |
| VIT_12s0057g01010.t01 | Wine grape | nucleus | 79.75 | 43.15 |
| CDX80136 | Canola | nucleus | 46.84 | 43.02 |
| CDY37212 | Canola | nucleus | 56.33 | 42.79 |
| CDX81449 | Canola | nucleus | 55.7 | 42.31 |
| CDX73560 | Canola | nucleus | 60.13 | 41.48 |
| CDX91501 | Canola | nucleus | 55.06 | 41.04 |
| CDX78169 | Canola | nucleus | 60.13 | 36.97 |
| CDY46752 | Canola | nucleus | 61.39 | 36.33 |
| CDY41063 | Canola | nucleus | 46.84 | 35.41 |
| CDY25952 | Canola | nucleus | 46.2 | 35.27 |
| CDY17715 | Canola | nucleus | 45.57 | 31.17 |
| CDY00411 | Canola | nucleus | 44.94 | 30.87 |
| CDY01304 | Canola | nucleus | 44.94 | 30.74 |
| CDY38832 | Canola | nucleus | 36.71 | 25.33 |
| CDY68650 | Canola | nucleus | 43.67 | 23.0 |
| CDX69967 | Canola | cytosol, nucleus, plastid | 23.42 | 22.42 |
| CDY21520 | Canola | cytosol, nucleus, plastid | 23.42 | 22.29 |
| CDX87185 | Canola | cytosol, nucleus, plastid | 22.78 | 21.3 |
| CDY16839 | Canola | cytosol, nucleus, plastid | 22.78 | 21.3 |
| CDY30639 | Canola | nucleus | 44.3 | 20.47 |
| CDY44761 | Canola | cytosol | 22.78 | 15.0 |
| CDY40760 | Canola | nucleus | 22.15 | 14.11 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | GO:A0A078G5C0 | UniProt:A0A078G5C0 | InterPro:CBFA_NFYB_domain | EnsemblPlants:CDY20167 |
| ProteinID:CDY20167 | ProteinID:CDY20167.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| GO:GO:0046982 | EnsemblPlantsGene:GSBRNA2T00010034001 | InterPro:Histone-fold | InterPro:IPR009072 | PFAM:PF00808 | PRINTS:PR00615 |
| ScanProsite:PS00685 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF87 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI0004EE3D02 |
| SEG:seg | : | : | : | : | : |
Description
BnaA01g28350DBnaA01g28350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G5C0]
Coordinates
chrLK032103:-:466312..466788
Molecular Weight (calculated)
17025.9 Da
IEP (calculated)
6.513
GRAVY (calculated)
-0.773
Length
158 amino acids
Sequence
(BLAST)
(BLAST)
001: MADSDNDSGG HKDGGGASSR EQDRFLPIAN VSRIMKKALP ANAKISKDAK ETVQECVSEF ISFVTGEASD KCQREKRKTI NGDDLLWAMT TLGFEDYVEP
101: LKVYLQKYRE VEGERMTPGG RQGDKEGGGG SGGGMYGGVV TMGHHHHQGH VYGGSGMN
101: LKVYLQKYRE VEGERMTPGG RQGDKEGGGG SGGGMYGGVV TMGHHHHQGH VYGGSGMN
001: MADSDNDSGG HKDGGNASTR EQDRFLPIAN VSRIMKKALP ANAKISKDAK ETVQECVSEF ISFITGEASD KCQREKRKTI NGDDLLWAMT TLGFEDYVEP
101: LKVYLQKYRE VEGEKTTTAG RQGDKEGGGG GGGAGSGSGG APMYGGGMVT TMGHQFSHHF S
101: LKVYLQKYRE VEGEKTTTAG RQGDKEGGGG GGGAGSGSGG APMYGGGMVT TMGHQFSHHF S
Arabidopsis Description
NFYB3Nuclear transcription factor Y subunit B-3 [Source:UniProtKB/Swiss-Prot;Acc:O23310]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.