CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052621_P002	Maize	nucleus	95.29	95.67
Zm00001d007436_P002	Maize	nucleus	90.98	92.43
HORVU4Hr1G034360.4	Barley	nucleus	85.49	85.49
TraesCS4A01G151500.1	Wheat	nucleus	85.1	85.1
Os11t0544700-01	Rice	nucleus	85.88	84.88
TraesCS4D01G158200.2	Wheat	nucleus	84.71	84.71
TraesCS4B01G161200.1	Wheat	nucleus	83.14	83.46
KRH51962	Soybean	golgi	21.96	63.64
GSMUA_Achr10P...	Banana	nucleus	58.82	58.59
GSMUA_Achr9P21090_001	Banana	nucleus	57.25	58.17
GSMUA_Achr2P03550_001	Banana	nucleus	57.65	57.65
OQU78230	Sorghum	nucleus	44.31	38.44

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.5.7.1.1	EntrezGene:8057006	UniProt:C5Y3V7	InterPro:CBFA_NFYB_domain	EnsemblPlants:EES08635
ProteinID:EES08635	ProteinID:EES08635.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072
PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF72	EnsemblPlantsGene:SORBI_3005G143400	SUPFAM:SSF47113	unigene:Sbi.7427
UniParc:UPI0001A864F4	RefSeq:XP_002449647.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:60709181..60714055

Molecular Weight (calculated)

28054.8 Da

IEP (calculated)

5.098

GRAVY (calculated)

-0.795

Length

255 amino acids

Sequence
(BLAST)

001: MRKKLGTRFP AARIKKIMQA DEDVGKIALA VPVLVSRALE LFLQDLIDRT YEITLQSGAK TLNSFHLKQC VKRYSSFDFL TEVVNKVPDL GGADSCGDER
101: GLPRRRKSNG SDPENDESRS SKMVIRNANI SPRGRGRGRG RGRGRPPTKR KEVGYVQFED ESSMFAEQGE PLPGEETVQE INNGNEIMPQ STQPPVEAPP
201: TAPAQATSSK VEEANTNHQS DWPMPDAIGS IGVGPSGFGH LTVQVDEDED YDNED

Best Arabidopsis Sequence Match ( AT3G12480.1 )
(BLAST)

001: MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK TVSSLHLKHC VERYNVFDFL REVVSKVPDY GHSQGQGHGD
101: VTMDDRSISK RRKPISDEVN DSDEEYKKSK TQEIGSAKTS GRGGRGRGRG RGRGGRAAKA AEREGLNREM EVEAANSGQP PPEDNVKMHA SESSPQEDEK
201: KGIDGTAASN EDTKQHLQSP KEGIDFDLNA ESLDLNETKL APATGTTTTT TAATDSEEYS GWPMMDISKM DPAQLASLGK RIDEDEEDYD EEG

Arabidopsis Description

NF-YC11NF-YC11 [Source:UniProtKB/TrEMBL;Acc:A0A178VDL4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.