Factsheet for GSMUA_Achr10P07370_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P21090_001	Banana	nucleus	74.61	76.1
GSMUA_Achr2P03550_001	Banana	nucleus	73.83	74.12
KRH51962	Soybean	golgi	21.48	62.5
EES08635	Sorghum	nucleus	58.59	58.82
Zm00001d007436_P002	Maize	nucleus	57.42	58.57
HORVU4Hr1G034360.4	Barley	nucleus	57.81	58.04
TraesCS4B01G161200.1	Wheat	nucleus	57.42	57.87
Zm00001d052621_P002	Maize	nucleus	57.42	57.87
TraesCS4A01G151500.1	Wheat	nucleus	57.03	57.25
TraesCS4D01G158200.2	Wheat	nucleus	56.64	56.86
Os11t0544700-01	Rice	nucleus	57.03	56.59
GSMUA_Achr4P00270_001	Banana	mitochondrion	33.98	32.83

Protein Annotations

EnsemblPlants:GSMUA_Achr10P07370_001	EnsemblPlants:GSMUA_Achr10T07370_001	EnsemblPlantsGene:GSMUA_Achr10G07370_001	Gene3D:1.10.20.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982
InterPro:CBFA_NFYB_domain	InterPro:Histone-fold	InterPro:IPR009072	PANTHER:PTHR10252	PANTHER:PTHR10252:SF72	PFAM:PF00808
SEG:seg	SUPFAM:SSF47113	UniParc:UPI0002963FEC	UniProt:M0RG63	MapMan:15.3.5.7.1.1	:

Description

histone-like transcription factor and archaeal histone, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G07370_001]

Coordinates

chr10:-:17589262..17597499

Molecular Weight (calculated)

28471.7 Da

IEP (calculated)

5.805

GRAVY (calculated)

-0.807

Length

256 amino acids

Sequence
(BLAST)

001: MRKKLGTRFP APRIKKIMQA DEDVGKIALA VPILVSKALE LFLQDLCDRT YEITLQRGAK TLNSSHLKQC VKAYNAYDFL TGVVNKVPNL GGMEPCEDEK
101: GICRRRKTLP HAGEVESNEE LHLRSSKMPM RNSNVSPRGR GRGRGRGRGR PPTKARDARY IKYEDDDITF GEHDEEVPLG QPGQPEGAEK ENTNQTVDPS
201: SMSLVSGAAT TANETKLEKC SAWPLPDGVG DIGFEPSRLV QLNMQVDEDE DYDNED

Best Arabidopsis Sequence Match ( AT5G19490.1 )
(BLAST)

001: MKKKLQTRFP ATRIKKIMQT DEEVGKIAMA VPLLVSKALE LFLQDLCNHT YDVTLSRGAK TVNAFHLKQC VQATNVFDFL RDTVAKVPDL GGSDTEDQSA
101: TKRRKVVDGS SCNDEDMIKT TQMHEVKHTS CGRGRRGRGR GRSSGRTGSG LSLKFEEDLE DGSPESSRTP SPENGSLSHD DTSWKKVASH NNHHSSNSEV
201: KVRNFDLNVE LDENGDNATW LETQLERSPD YPLEINEMKI DPDDQQQASA SDEEDYDEES IDQE

Arabidopsis Description

Histone superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K162]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.