Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P03550_001 | Banana | nucleus | 80.08 | 78.82 |
| GSMUA_Achr10P... | Banana | nucleus | 76.1 | 74.61 |
| KRH51962 | Soybean | golgi | 21.91 | 62.5 |
| Zm00001d007436_P002 | Maize | nucleus | 58.17 | 58.17 |
| Os11t0544700-01 | Rice | nucleus | 58.96 | 57.36 |
| EES08635 | Sorghum | nucleus | 58.17 | 57.25 |
| Zm00001d052621_P002 | Maize | nucleus | 57.37 | 56.69 |
| TraesCS4B01G161200.1 | Wheat | nucleus | 56.57 | 55.91 |
| HORVU4Hr1G034360.4 | Barley | nucleus | 56.57 | 55.69 |
| TraesCS4A01G151500.1 | Wheat | nucleus | 56.18 | 55.29 |
| TraesCS4D01G158200.2 | Wheat | nucleus | 55.38 | 54.51 |
| GSMUA_Achr4P00270_001 | Banana | mitochondrion | 36.65 | 34.72 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P21090_001 | EnsemblPlants:GSMUA_Achr9T21090_001 | EnsemblPlantsGene:GSMUA_Achr9G21090_001 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 |
| InterPro:CBFA_NFYB_domain | InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF72 | PFAM:PF00808 |
| SEG:seg | SUPFAM:SSF47113 | UniParc:UPI0002959513 | UniProt:M0U268 | MapMan:15.3.5.7.1.1 | : |
Description
histone-like transcription factor and archaeal histone, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G21090_001]
Coordinates
chr9:+:25778539..25783410
Molecular Weight (calculated)
27821.0 Da
IEP (calculated)
6.669
GRAVY (calculated)
-0.730
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKKLGTRFP ASRIKKIMQA DEDVGKIALA VPILVSKALE LFLQDLCDRT YEITLQRGAK TLNSLHLKQC VRTYSAYDFL TGVVNKVPNL GGMEPCEDEK
101: GICRRRKTLP HGDEVESNEN CQLRSSKMAM TNTSVSPRGR GRGRGRGRGR PPTRARDVGH MKFEDDSSMF GDHDEIPLGQ PEGTKENSHQ SALPSSTPVM
201: NGSATSAVET KQEQCSAWPL PGGVDNISIE PSRLVQLTMQ IDEDEDYDNE D
101: GICRRRKTLP HGDEVESNEN CQLRSSKMAM TNTSVSPRGR GRGRGRGRGR PPTRARDVGH MKFEDDSSMF GDHDEIPLGQ PEGTKENSHQ SALPSSTPVM
201: NGSATSAVET KQEQCSAWPL PGGVDNISIE PSRLVQLTMQ IDEDEDYDNE D
001: MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK TVSSLHLKHC VERYNVFDFL REVVSKVPDY GHSQGQGHGD
101: VTMDDRSISK RRKPISDEVN DSDEEYKKSK TQEIGSAKTS GRGGRGRGRG RGRGGRAAKA AEREGLNREM EVEAANSGQP PPEDNVKMHA SESSPQEDEK
201: KGIDGTAASN EDTKQHLQSP KEGIDFDLNA ESLDLNETKL APATGTTTTT TAATDSEEYS GWPMMDISKM DPAQLASLGK RIDEDEEDYD EEG
101: VTMDDRSISK RRKPISDEVN DSDEEYKKSK TQEIGSAKTS GRGGRGRGRG RGRGGRAAKA AEREGLNREM EVEAANSGQP PPEDNVKMHA SESSPQEDEK
201: KGIDGTAASN EDTKQHLQSP KEGIDFDLNA ESLDLNETKL APATGTTTTT TAATDSEEYS GWPMMDISKM DPAQLASLGK RIDEDEEDYD EEG
Arabidopsis Description
NF-YC11NF-YC11 [Source:UniProtKB/TrEMBL;Acc:A0A178VDL4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.