Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g096710.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G13570.1 | Solyc01g096710.2.1 | AT3G12480.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400043176 | Potato | nucleus | 80.77 | 84.85 |
| Solyc04g009520.2.1 | Tomato | nucleus | 27.88 | 67.44 |
| Bra037211.1-P | Field mustard | nucleus | 53.37 | 53.37 |
| CDY37212 | Canola | nucleus | 53.37 | 53.37 |
| Bra013143.1-P | Field mustard | nucleus | 53.37 | 53.11 |
| CDX89608 | Canola | nucleus | 53.37 | 53.11 |
| CDX93117 | Canola | nucleus | 53.37 | 53.11 |
| Solyc01g067130.2.1 | Tomato | plastid | 35.1 | 52.9 |
| Solyc09g074760.1.1 | Tomato | nucleus | 35.1 | 52.9 |
| CDX81449 | Canola | nucleus | 52.88 | 52.88 |
| KRH59594 | Soybean | nucleus | 51.92 | 52.17 |
| AT2G13570.1 | Thale cress | nucleus | 53.85 | 52.09 |
| KRH40945 | Soybean | nucleus | 51.92 | 48.87 |
| Solyc09g007290.2.1 | Tomato | nucleus | 30.29 | 48.84 |
| Solyc06g009010.1.1 | Tomato | nucleus | 38.94 | 45.51 |
| Solyc04g054150.1.1 | Tomato | nucleus | 40.38 | 44.68 |
| Solyc01g099320.2.1 | Tomato | nucleus | 30.77 | 43.84 |
| Solyc04g049910.2.1 | Tomato | nucleus | 34.62 | 43.64 |
| Solyc07g065500.1.1 | Tomato | nucleus | 37.98 | 43.41 |
| Solyc12g006120.1.1 | Tomato | nucleus | 40.38 | 41.58 |
| Solyc11g012750.1.1 | Tomato | nucleus | 28.85 | 39.47 |
| Solyc02g032190.1.1 | Tomato | cytosol, nucleus, plastid | 16.35 | 35.79 |
| Solyc04g015060.1.1 | Tomato | nucleus | 32.21 | 28.27 |
| Solyc05g005390.1.1 | Tomato | nucleus, plastid | 30.77 | 26.89 |
| Solyc10g009440.2.1 | Tomato | plastid | 28.85 | 25.21 |
| Solyc05g005440.1.1 | Tomato | cytosol | 24.52 | 24.52 |
| Solyc05g015550.1.1 | Tomato | mitochondrion | 25.48 | 24.2 |
| Solyc05g005350.1.1 | Tomato | nucleus | 25.0 | 23.74 |
| Solyc07g065580.1.1 | Tomato | nucleus | 20.19 | 23.6 |
| Solyc07g065570.1.1 | Tomato | nucleus | 21.15 | 23.4 |
| Solyc05g005360.1.1 | Tomato | nucleus | 24.52 | 22.77 |
| Solyc05g005370.1.1 | Tomato | nucleus | 24.52 | 22.77 |
| Solyc06g069310.2.1 | Tomato | cytosol, mitochondrion, nucleus | 11.06 | 17.56 |
| Solyc03g114400.2.1 | Tomato | cytosol, nucleus, plastid | 11.06 | 17.42 |
| Solyc05g005380.1.1 | Tomato | plastid | 29.33 | 17.09 |
| Solyc05g005340.2.1 | Tomato | extracellular | 8.17 | 13.71 |
| Solyc02g032180.1.1 | Tomato | nucleus | 14.9 | 10.8 |
| Solyc12g038390.1.1 | Tomato | cytosol | 3.85 | 9.76 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | UniProt:K4DDT5 | PFAM:PF00808 |
| PRINTS:PR00615 | ScanProsite:PS00685 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF88 | SUPFAM:SSF47113 | EnsemblPlantsGene:Solyc12g027650.1 |
| EnsemblPlants:Solyc12g027650.1.1 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI0002769B67 | SEG:seg | : | : |
Description
Nuclear transcription factor Y subunit B-7 [Source:Projected from Arabidopsis thaliana (AT2G13570) UniProtKB/Swiss-Prot;Acc:Q9SIT9]
Coordinates
chr12:-:25328910..25330137
Molecular Weight (calculated)
23680.4 Da
IEP (calculated)
7.958
GRAVY (calculated)
-0.585
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDERGGNCA ESSSSTLMPM PMNKEQDRFL PIANVGRIMK KVIPGNGKIS KDAKETVQEC VSEFISFVTG EASDKCQREK RKTINGDDII WAITILGFED
101: YVLPLKQYLN KYRELEGEKL NVPKHVNQQQ QQHAADQIKP NFSYNTTTTV YSPTPLLPQT SFVPTDQPFP LPFSPNSQLP KQEHLDSMGH WMIRRSKFPC
201: LGRMAIIF
101: YVLPLKQYLN KYRELEGEKL NVPKHVNQQQ QQHAADQIKP NFSYNTTTTV YSPTPLLPQT SFVPTDQPFP LPFSPNSQLP KQEHLDSMGH WMIRRSKFPC
201: LGRMAIIF
001: MTEESPEEDH GSPGVAETNP GSPSSKTNNN NNNNKEQDRF LPIANVGRIM KKVLPGNGKI SKDAKETVQE CVSEFISFVT GEASDKCQRE KRKTINGDDI
101: IWAITTLGFE DYVAPLKVYL CKYRDTEGEK VNSPKQQQQR QQQQQIQQQN HHNYQFQEQD QNNNNMSCTS YISHHHPSPF LPVDHQPFPN IAFSPKSLQK
201: QFPQQHDNNI DSIHW
101: IWAITTLGFE DYVAPLKVYL CKYRDTEGEK VNSPKQQQQR QQQQQIQQQN HHNYQFQEQD QNNNNMSCTS YISHHHPSPF LPVDHQPFPN IAFSPKSLQK
201: QFPQQHDNNI DSIHW
Arabidopsis Description
NFYB7Uncharacterized protein At2g13570 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV44]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.