Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g012750.1.1 | Tomato | nucleus | 43.46 | 67.76 |
| VIT_00s0956g00020.t01 | Wine grape | nucleus | 50.21 | 56.4 |
| KRH51197 | Soybean | nucleus | 52.32 | 55.61 |
| Solyc04g009520.2.1 | Tomato | nucleus | 19.83 | 54.65 |
| KRH01950 | Soybean | nucleus | 51.48 | 53.98 |
| CDY41063 | Canola | nucleus | 46.41 | 52.63 |
| CDY25952 | Canola | nucleus | 45.57 | 52.17 |
| Bra017471.1-P | Field mustard | nucleus | 44.3 | 50.24 |
| Solyc02g032190.1.1 | Tomato | cytosol, nucleus, plastid | 19.83 | 49.47 |
| Bra024924.1-P | Field mustard | nucleus | 48.1 | 49.35 |
| CDY17715 | Canola | nucleus | 48.1 | 49.35 |
| Solyc05g005440.1.1 | Tomato | cytosol | 42.62 | 48.56 |
| Solyc10g009440.2.1 | Tomato | plastid | 48.52 | 48.32 |
| AT5G47670.3 | Thale cress | nucleus | 46.84 | 47.44 |
| Solyc05g005390.1.1 | Tomato | nucleus, plastid | 47.26 | 47.06 |
| Solyc01g067130.2.1 | Tomato | plastid | 26.58 | 45.65 |
| GSMUA_Achr3P04310_001 | Banana | nucleus | 40.51 | 45.28 |
| Solyc09g074760.1.1 | Tomato | nucleus | 25.74 | 44.2 |
| Solyc09g007290.2.1 | Tomato | nucleus | 24.05 | 44.19 |
| Solyc05g005350.1.1 | Tomato | nucleus | 40.51 | 43.84 |
| Solyc05g005360.1.1 | Tomato | nucleus | 40.51 | 42.86 |
| Solyc05g005370.1.1 | Tomato | nucleus | 39.66 | 41.96 |
| Solyc04g049910.2.1 | Tomato | nucleus | 28.69 | 41.21 |
| Solyc07g065500.1.1 | Tomato | nucleus | 31.65 | 41.21 |
| Solyc12g006120.1.1 | Tomato | nucleus | 32.07 | 37.62 |
| Solyc06g009010.1.1 | Tomato | nucleus | 27.85 | 37.08 |
| Solyc01g099320.2.1 | Tomato | nucleus | 22.78 | 36.99 |
| Solyc05g015550.1.1 | Tomato | mitochondrion | 33.33 | 36.07 |
| Solyc04g054150.1.1 | Tomato | nucleus | 26.58 | 33.51 |
| Solyc12g027650.1.1 | Tomato | nucleus | 28.27 | 32.21 |
| Solyc05g005380.1.1 | Tomato | plastid | 47.26 | 31.37 |
| Solyc07g065570.1.1 | Tomato | nucleus | 22.78 | 28.72 |
| Solyc07g065580.1.1 | Tomato | nucleus | 21.52 | 28.65 |
| Solyc05g005340.2.1 | Tomato | extracellular | 13.5 | 25.81 |
| Solyc02g032180.1.1 | Tomato | nucleus | 28.69 | 23.69 |
| Solyc06g069310.2.1 | Tomato | cytosol, mitochondrion, nucleus | 12.24 | 22.14 |
| Solyc03g114400.2.1 | Tomato | cytosol, nucleus, plastid | 11.81 | 21.21 |
| Solyc12g038390.1.1 | Tomato | cytosol | 3.8 | 10.98 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | UniProt:K4BQ09 | PFAM:PF00808 |
| PRINTS:PR00615 | ScanProsite:PS00685 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF20 | SUPFAM:SSF47113 | EnsemblPlantsGene:Solyc04g015060.1 |
| EnsemblPlants:Solyc04g015060.1.1 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI00027667FB | SEG:seg | : | : |
Description
No Description!
Coordinates
chr4:+:5258000..5260765
Molecular Weight (calculated)
26415.7 Da
IEP (calculated)
5.894
GRAVY (calculated)
-0.723
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLGGGNGSG GFHGYRRFPQ TTSADGIATL NQAIPTTNHL NDNNNASVPD DSECTVREQD RFMPIANVIR IMRKTLPPHA KISDDAKETI QECVSEFISF
101: VTGEANDRCQ REQRKTITAE DVLWAMSKLG FDDYIEPLTM HLHRYRECDG GDRGSLRGEP LMLMKSRGAM VDPAASTSIG NNMTHVNYPL PPNFTMTHHH
201: HGYYTYAHMT NDNVATNSQA NLDEANNNVE SFGEHNK
101: VTGEANDRCQ REQRKTITAE DVLWAMSKLG FDDYIEPLTM HLHRYRECDG GDRGSLRGEP LMLMKSRGAM VDPAASTSIG NNMTHVNYPL PPNFTMTHHH
201: HGYYTYAHMT NDNVATNSQA NLDEANNNVE SFGEHNK
001: MERGGFHGYR KLSVNNTTPS PPGLAANFLM AEGSMRPPEF NQPNKTSNGG EEECTVREQD RFMPIANVIR IMRRILPAHA KISDDSKETI QECVSEYISF
101: ITGEANERCQ REQRKTITAE DVLWAMSKLG FDDYIEPLTL YLHRYRELEG ERGVSCSAGS VSMTNGLVVK RPNGTMTEYG AYGPVPGIHM AQYHYRHQNG
201: FVFSGNEPNS KMSGSSSGAS GARVEVFPTQ QHKY
101: ITGEANERCQ REQRKTITAE DVLWAMSKLG FDDYIEPLTL YLHRYRELEG ERGVSCSAGS VSMTNGLVVK RPNGTMTEYG AYGPVPGIHM AQYHYRHQNG
201: FVFSGNEPNS KMSGSSSGAS GARVEVFPTQ QHKY
Arabidopsis Description
NFYB6Nuclear transcription factor Y subunit B-6 [Source:UniProtKB/Swiss-Prot;Acc:Q84W66]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.