Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra008669.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G21970.1 | Bra008669.1-P | AT5G15840.1 | 17138697 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012301.1-P | Field mustard | nucleus | 81.31 | 87.0 |
| AT1G21970.1 | Thale cress | nucleus | 76.17 | 68.49 |
| CDY68650 | Canola | nucleus | 93.93 | 67.0 |
| CDY30639 | Canola | nucleus | 99.07 | 61.99 |
| KRG89094 | Soybean | cytosol | 42.52 | 54.17 |
| KRH66068 | Soybean | nucleus | 43.46 | 53.45 |
| Bra017471.1-P | Field mustard | nucleus | 45.33 | 46.41 |
| Bra024924.1-P | Field mustard | nucleus | 48.13 | 44.59 |
| Bra005074.1-P | Field mustard | nucleus | 28.97 | 43.66 |
| TraesCS6A01G287300.1 | Wheat | nucleus | 48.6 | 42.28 |
| TraesCS6B01G316600.1 | Wheat | nucleus | 48.6 | 42.28 |
| TraesCS6D01G268000.1 | Wheat | nucleus | 48.6 | 42.28 |
| HORVU6Hr1G072110.1 | Barley | nucleus | 47.66 | 42.15 |
| Bra021147.1-P | Field mustard | nucleus | 30.84 | 42.04 |
| Bra000462.1-P | Field mustard | nucleus | 29.44 | 40.38 |
| Bra018585.1-P | Field mustard | nucleus | 24.77 | 40.15 |
| Bra027199.1-P | Field mustard | nucleus | 31.78 | 40.0 |
| Zm00001d051697_P001 | Maize | nucleus | 49.07 | 39.77 |
| Os02t0725700-01 | Rice | nucleus | 47.2 | 39.76 |
| Bra022147.1-P | Field mustard | nucleus | 33.64 | 38.71 |
| Bra004428.1-P | Field mustard | nucleus | 28.04 | 38.71 |
| Bra016397.1-P | Field mustard | cytosol | 34.58 | 38.54 |
| Zm00001d017898_P001 | Maize | nucleus | 49.53 | 38.13 |
| KXG30848 | Sorghum | nucleus | 48.6 | 37.68 |
| Bra006991.1-P | Field mustard | nucleus | 31.31 | 37.64 |
| Bra017473.1-P | Field mustard | nucleus | 32.24 | 37.5 |
| Bra001615.1-P | Field mustard | nucleus | 32.24 | 36.51 |
| Bra017209.1-P | Field mustard | nucleus | 30.84 | 34.55 |
| Bra013143.1-P | Field mustard | nucleus | 32.71 | 33.49 |
| Bra023095.1-P | Field mustard | nucleus | 30.84 | 33.0 |
| Bra037211.1-P | Field mustard | nucleus | 31.78 | 32.69 |
| Bra035959.1-P | Field mustard | cytosol, nucleus, plastid | 17.29 | 22.02 |
| Bra009328.1-P | Field mustard | cytosol, nucleus, plastid | 16.36 | 21.08 |
| Bra005976.1-P | Field mustard | cytosol, nucleus, plastid | 14.49 | 20.26 |
| Bra028668.1-P | Field mustard | nucleus | 13.08 | 14.58 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | EnsemblPlantsGene:Bra031356 | EnsemblPlants:Bra031356.1 | EnsemblPlants:Bra031356.1-P | InterPro:CBFA_NFYB_domain |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046982 | InterPro:Histone-fold |
| InterPro:IPR009072 | UniProt:M4ERD2 | PFAM:PF00808 | PRINTS:PR00615 | ScanProsite:PS00685 | PANTHER:PTHR11064 |
| PANTHER:PTHR11064:SF79 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI00025475F6 | SEG:seg | : |
Description
AT1G21970 (E=2e-066) LEC1, EMB 212, EMB212, NF-YB9 | LEC1 (LEAFY COTYLEDON 1); transcription activator/ transcription factor
Coordinates
chrA05:+:15798606..15799250
Molecular Weight (calculated)
23584.6 Da
IEP (calculated)
5.684
GRAVY (calculated)
-0.743
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHQDNSIPA ATGNLIACDD KNKSIVQKQQ PCMAREQDQY MPIANVIRIM RRTLPPHAKI SDDAKETIQE CVSEYISFVT GEANERCQRE QRKTITAEDI
101: LWAMSKLGFD DYVGPLNLFI NRYREFETDR GCSLRGESSS FKPAFGGNGF GFHGPPQGPP HPGRYGYGTL DQSMVMGGGR YYQNGSGEDG SGGGGGSSPS
201: MNGMPVFDQY GQYK
101: LWAMSKLGFD DYVGPLNLFI NRYREFETDR GCSLRGESSS FKPAFGGNGF GFHGPPQGPP HPGRYGYGTL DQSMVMGGGR YYQNGSGEDG SGGGGGSSPS
201: MNGMPVFDQY GQYK
001: MERGAPFSHY QLPKSISELN LDQHSNNPTP MTSSVVVAGA GDKNNGIVVQ QQPPCVAREQ DQYMPIANVI RIMRKTLPSH AKISDDAKET IQECVSEYIS
101: FVTGEANERC QREQRKTITA EDILWAMSKL GFDNYVDPLT VFINRYREIE TDRGSALRGE PPSLRQTYGG NGIGFHGPSH GLPPPGPYGY GMLDQSMVMG
201: GGRYYQNGSS GQDESSVGGG SSSSINGMPA FDHYGQYK
101: FVTGEANERC QREQRKTITA EDILWAMSKL GFDNYVDPLT VFINRYREIE TDRGSALRGE PPSLRQTYGG NGIGFHGPSH GLPPPGPYGY GMLDQSMVMG
201: GGRYYQNGSS GQDESSVGGG SSSSINGMPA FDHYGQYK
Arabidopsis Description
NFYB9Nuclear transcription factor Y subunit B-9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFD8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.