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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • cytosol 2
  • mitochondrion 1
  • nucleus 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX95014

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G59220.1 CDX95014 AT1G09030.1 17322342
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX89016 Canola nucleus 91.0 90.69
CDY06016 Canola cytosol 73.36 79.4
AT3G59220.1 Thale cress cytosol 77.85 78.4
CDY57499 Canola cytoskeleton, cytosol, nucleus 79.58 74.43
CDX67787 Canola nucleus 62.63 66.79
CDX98356 Canola cytosol 60.21 65.91
CDY55513 Canola plastid 64.71 63.18
CDX83501 Canola mitochondrion 66.78 60.31
CDY17946 Canola mitochondrion 66.09 60.06
CDY42802 Canola mitochondrion 66.44 59.81
CDY06015 Canola cytosol 58.48 59.51
CDY57498 Canola cytosol 56.06 58.27
CDY17721 Canola mitochondrion 38.75 57.14
PGSC0003DMT400031070 Potato mitochondrion 55.36 55.56
VIT_05s0062g01190.t01 Wine grape cytosol, nucleus, peroxisome 56.4 55.44
Solyc09g098160.2.1 Tomato mitochondrion 55.71 55.33
PGSC0003DMT400031088 Potato cytosol 56.4 55.07
VIT_05s0094g00610.t01 Wine grape cytosol 19.72 52.78
HORVU5Hr1G092220.3 Barley mitochondrion, peroxisome 23.18 51.54
GSMUA_Achr3P02460_001 Banana cytosol 52.6 51.53
GSMUA_Achr10P... Banana cytosol 52.94 51.34
TraesCS4A01G336100.1 Wheat nucleus 51.56 50.68
TraesCS5B01G535900.1 Wheat plastid 51.21 50.34
TraesCS5D01G533400.1 Wheat cytosol 51.21 50.34
TraesCS5D01G533200.1 Wheat cytosol, mitochondrion, nucleus, plastid 50.52 50.17
TraesCS5D01G533500.1 Wheat plastid 51.9 49.83
GSMUA_Achr9P01680_001 Banana cytosol 51.21 49.83
Solyc09g098180.2.1 Tomato plastid 56.4 49.39
EER96962 Sorghum cytosol 49.48 48.64
Os09t0484800-01 Rice cytosol, mitochondrion 49.83 48.48
KRH01821 Soybean plastid 54.33 48.46
KRH46866 Soybean plastid 53.98 48.0
GSMUA_Achr3P11020_001 Banana cytosol 49.83 47.84
Zm00001d020915_P002 Maize cytosol 48.1 46.96
HORVU5Hr1G120790.2 Barley cytosol 52.25 45.9
HORVU5Hr1G072760.2 Barley mitochondrion 48.1 45.87
TraesCS5B01G261100.1 Wheat mitochondrion 48.1 45.57
TraesCS5D01G270300.1 Wheat cytosol 47.75 45.54
Zm00001d008595_P001 Maize plastid 51.9 45.32
TraesCS4A01G335900.1 Wheat plastid 46.02 45.24
TraesCS5A01G262700.1 Wheat mitochondrion 48.44 44.59
CDY22806 Canola cytosol 47.06 43.73
CDY37125 Canola cytosol 47.06 43.73
Zm00001d009514_P001 Maize cytosol, endoplasmic reticulum 14.88 43.43
OQU90634 Sorghum mitochondrion 52.6 42.58
Os03t0845000-01 Rice plasma membrane 51.9 41.55
TraesCS5B01G536000.2 Wheat plastid 51.9 40.54
TraesCS4A01G336000.2 Wheat nucleus 46.37 40.48
TraesCS4A01G336200.2 Wheat plastid 51.21 40.0
VIT_09s0096g00130.t01 Wine grape cytosol, nucleus, plastid 13.84 40.0
TraesCS5B01G535700.3 Wheat plastid 50.87 39.84
Zm00001d034829_P001 Maize mitochondrion 51.9 39.58
TraesCS5B01G535800.1 Wheat plastid 50.17 38.98
TraesCS5D01G533100.1 Wheat plastid 50.52 38.73
HORVU5Hr1G120780.3 Barley plastid 50.52 38.02
TraesCS1B01G420000.1 Wheat plastid 45.67 36.67
Os08t0364900-00 Rice plastid 44.64 36.65
TraesCS1A01G391900.1 Wheat plastid 44.64 35.64
TraesCS1D01G400000.1 Wheat plastid 44.29 35.56
HORVU5Hr1G120800.4 Barley plastid 52.25 34.01
Zm00001d046171_P001 Maize endoplasmic reticulum, mitochondrion, nucleus, plastid 23.18 33.33
HORVU1Hr1G086450.3 Barley endoplasmic reticulum, plastid 43.6 31.66
HORVU5Hr1G120810.1 Barley plastid 26.3 30.52
EES14882 Sorghum cytosol, plastid 39.79 30.42
Zm00001d032363_P001 Maize cytosol 39.45 30.4
VIT_09s0096g00380.t01 Wine grape nucleus 8.65 17.86
Protein Annotations
EnsemblPlants:CDY00611EnsemblPlantsGene:GSBRNA2T00110394001Gene3D:2.60.120.10InterPro:IPR014710InterPro:PirinInterPro:Pirin_C_dom
InterPro:Pirin_N_domInterPro:RmlC-like_jellyrollInterPro:RmlC_Cupin_sfPANTHER:PTHR13903PANTHER:PTHR13903:SF5PFAM:PF02678
PFAM:PF05726PIRSF:PIRSF006232ProteinID:CDY00611ProteinID:CDY00611.1SUPFAM:SSF51182UniParc:UPI0004EDB476
MapMan:35.1:::::
Description
BnaC04g23140D
Coordinates
chrLK031920:+:729140..730550
Molecular Weight (calculated)
31985.1 Da
IEP (calculated)
4.926
GRAVY (calculated)
-0.226
Length
289 amino acids
Sequence
(BLAST)
001: MSHSDDNRVT RQVIKNFFVK LQEEGEGALV RNAITEMDQK LLDPFVLLVE FSFSLSVGYP DHPHRGFESL TYILKGGIVH NDLKGHKSII KAGDVQWMTA
101: GRGIIHSEYP EQEVNNGLQL WINLPSIHRM IEPKNLELSG SEIPKAEEDG VEVKVIAGDS MGIKSPCQTT TPMMYLDFTL KPGSQTHQTV PESWTAFAYI
201: LEGDEGLFSS MDSSAISAHN VVVFGPGELV SVWNKSSSRS LRFLLIAGKP ISEPMVQSGP FVMSSQAEID MAFEDYQNAK NGFEMAKSS
Best Arabidopsis Sequence Match ( AT3G59220.1 )
(BLAST)
001: MTYENNSVPR IVIKKVLAKL EKEGEGAVVR NGITKIDQKL LDPFVLLVEF SFSLSAGFPD HPHRGFESVT YMLQGGIIHK DPKGHKGTIQ AGDVQWMTAG
101: RGIIHSEFPE EEVNNGLQLW INLPSTEKMT EPKYKELSSL DIPRAEENGV EVKVIAGDSM GIKSPVYTRT PTMFLDFTLK PGSQTHQTVP ESWTAFAYII
201: EGDEGVFGSL NSSAISAHHV VVFGPGDLVS VWNKSTSRSL RFLLIAGEPI GEPVVQCGPF VMNSQAEIDM AFDDYQNAKN GFEMAKC
Arabidopsis Description
PRN1Pirin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX49]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.