Factsheet for Zm00001d032363_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d042197_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59220.1	Zm00001d042197_P001	AT1G09030.1	17322342

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14882	Sorghum	cytosol, plastid	70.67	70.11
Os08t0364900-00	Rice	plastid	60.53	64.49
TraesCS1B01G420000.1	Wheat	plastid	57.07	59.44
TraesCS1D01G400000.1	Wheat	plastid	56.0	58.33
TraesCS1A01G391900.1	Wheat	plastid	56.27	58.29
VIT_05s0094g00610.t01	Wine grape	cytosol	15.2	52.78
HORVU1Hr1G086450.3	Barley	endoplasmic reticulum, plastid	53.87	50.75
Zm00001d020915_P002	Maize	cytosol	39.73	50.34
VIT_19s0090g01530.t01	Wine grape	cytosol	38.67	48.66
Zm00001d009514_P001	Maize	cytosol, endoplasmic reticulum	12.8	48.48
Bra000289.1-P	Field mustard	cytosol	38.13	48.47
Solyc09g098160.2.1	Tomato	mitochondrion	37.6	48.45
PGSC0003DMT400031088	Potato	cytosol	37.87	47.97
VIT_05s0062g01190.t01	Wine grape	cytosol, nucleus, peroxisome	37.33	47.62
Bra004746.1-P	Field mustard	plastid	37.33	47.3
CDX67787	Canola	nucleus	34.13	47.23
PGSC0003DMT400031070	Potato	mitochondrion	36.27	47.22
CDY55513	Canola	plastid	37.07	46.96
CDY17721	Canola	mitochondrion	24.53	46.94
KRH14295	Soybean	cytosol	37.6	46.84
PGSC0003DMT400033425	Potato	mitochondrion	36.53	46.76
Zm00001d008595_P001	Maize	plastid	41.07	46.53
KRH73851	Soybean	cytoskeleton, cytosol, nucleus	37.33	46.51
KRH46283	Soybean	mitochondrion	36.8	46.31
CDX98356	Canola	cytosol	32.27	45.83
KRG98621	Soybean	nucleus	27.73	45.81
AT3G59220.1	Thale cress	cytosol	34.93	45.64
CDX83501	Canola	mitochondrion	38.67	45.31
CDY42802	Canola	mitochondrion	38.67	45.17
AT1G50590.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	37.33	45.16
AT3G59260.1	Thale cress	cytosol	32.53	45.02
CDY17946	Canola	mitochondrion	37.6	44.34
CDY37125	Canola	cytosol	36.53	44.05
VIT_09s0096g00130.t01	Wine grape	cytosol, nucleus, plastid	11.73	44.0
CDY22806	Canola	cytosol	36.27	43.73
Bra018859.1-P	Field mustard	cytosol	36.0	43.41
CDY06015	Canola	cytosol	32.8	43.31
Solyc09g098180.2.1	Tomato	plastid	37.87	43.03
CDY57498	Canola	cytosol	31.73	42.81
KRH01821	Soybean	plastid	36.27	41.98
Zm00001d034829_P001	Maize	mitochondrion	42.13	41.69
CDY06016	Canola	cytosol	28.8	40.45
Solyc12g014590.1.1	Tomato	mitochondrion	35.2	40.37
KRH46866	Soybean	plastid	34.93	40.31
CDY00611	Canola	nucleus	30.4	39.45
CDX89016	Canola	nucleus	30.4	39.31
CDY57499	Canola	cytoskeleton, cytosol, nucleus	32.27	39.16
Bra014547.1-P	Field mustard	nucleus	30.13	38.97
AT2G43120.2	Thale cress	nucleus	37.87	38.17
Bra003367.1-P	Field mustard	cytosol	19.2	37.7
Bra007438.1-P	Field mustard	cytosol	18.4	37.3
Bra007437.1-P	Field mustard	cytosol	19.2	36.73
PGSC0003DMT400057126	Potato	cytosol, mitochondrion, nucleus, plastid	28.8	36.24
Solyc07g065160.2.1	Tomato	mitochondrion	28.53	35.91
Zm00001d046171_P001	Maize	endoplasmic reticulum, mitochondrion, nucleus, plastid	18.4	34.33
VIT_09s0096g00380.t01	Wine grape	nucleus	7.2	19.29

Protein Annotations

EMBL:BT038257	EnsemblPlants:Zm00001d032363_P001	EnsemblPlants:Zm00001d032363_T001	EnsemblPlantsGene:Zm00001d032363	EntrezGene:100217274	Gene3D:2.60.120.10
InterPro:IPR014710	InterPro:Pirin	InterPro:Pirin_C_dom	InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf
PANTHER:PTHR13903	PANTHER:PTHR13903:SF11	PFAM:PF02678	PFAM:PF05726	PIRSF:PIRSF006232	ProteinID:ONM04932.1
SEG:seg	SUPFAM:SSF51182	UniParc:UPI00017B6CA6	UniProt:B4FMB9	MapMan:35.1	:

Description

Pirin-like protein 2

Coordinates

chr1:-:224032659..224035932

Molecular Weight (calculated)

39754.6 Da

IEP (calculated)

5.714

GRAVY (calculated)

-0.331

Length

375 amino acids

Sequence
(BLAST)

001: MSAATACMPL VLDPSPLHGS AAMADAVERR QPGGMETTKT GSEGTLGRVV RSQVFGNEDD DRAGHGDGDE VSKPRAVVHT LTCERKPLFE GFALWRSIGR
101: PELPELDPIL SFDEFEFSAP AGFLDHPHRG FENVTYMLEG GISYHDFSGH KGTINPGDVQ WLTAGRGVVH AEMPAAGQGV QRGINIWINL SAADKMVEPR
201: YQDLASHDIP AAAADAAGGV SVKVIAGECL GARSPLRPRT PALCLDVALR PGARLRQPVP RGWSACAYVI HGEAAFGTAS GEGNGASTAT ARTLVVFGGD
301: GDGVELRGDA AGQGARVMLV AARSHGEAVA RDGPFVMNTR EEVDQAREDY RHRRNGFEMA DGWTSDHASA AEKHS

Best Arabidopsis Sequence Match ( AT2G43120.2 )
(BLAST)

001: MAHNQFKDSL DPLSSINRHT ESQHQNTSKI RLLPRKATKK KKREEKTTLK YMRAAINRAN SLGGLFSFRF IRNIKSMSSS TSQDFVSRPV IKKVFAKLQK
101: EGDGAVVRRG ISRSEQKLLD PFLMLDEFSV SPPAGFPDHP HRGFETVTYV LEGGITHQDF KGHKGTIYAG DVQWMTAGRG IIHSEMPEEE VNKGLQLWIN
201: LSSNEKMIEP NYQELSHSDI PKAEQNGVEV KVIAGESMGI QSPVYTRTPT MFLDFTLQPG AQIHQNVPES WNAFAYILES GEGGGVFSSS NSSPIPAHSV
301: VVFGPGNDGV SVWNKSSSKQ LRFVLIAGEP IGEPVVQYGP FVMNTQAEID MTIEDYHYGK NGFEMAKYWR SQ

Arabidopsis Description

RmlC-like cupins superfamily protein [Source:TAIR;Acc:AT2G43120]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.