Factsheet for PGSC0003DMT400057126

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g065160.2.1	Tomato	mitochondrion	97.32	97.32
HORVU5Hr1G092220.3	Barley	mitochondrion, peroxisome	35.57	81.54
PGSC0003DMT400033425	Potato	mitochondrion	60.4	61.43
VIT_19s0090g01530.t01	Wine grape	cytosol	57.72	57.72
KRH73851	Soybean	cytoskeleton, cytosol, nucleus	58.05	57.48
KRH14295	Soybean	cytosol	58.05	57.48
KRH46283	Soybean	mitochondrion	56.38	56.38
GSMUA_Achr3P11020_001	Banana	cytosol	53.36	52.82
EER96962	Sorghum	cytosol	51.68	52.38
Os09t0484800-01	Rice	cytosol, mitochondrion	51.68	51.85
Zm00001d009514_P001	Maize	cytosol, endoplasmic reticulum	17.11	51.52
Zm00001d020915_P002	Maize	cytosol	51.01	51.35
GSMUA_Achr3P02460_001	Banana	cytosol	50.34	50.85
TraesCS5D01G270300.1	Wheat	cytosol	51.68	50.83
HORVU5Hr1G072760.2	Barley	mitochondrion	51.34	50.49
PGSC0003DMT400031088	Potato	cytosol	50.0	50.34
GSMUA_Achr10P...	Banana	cytosol	50.34	50.34
TraesCS5B01G261100.1	Wheat	mitochondrion	51.34	50.16
PGSC0003DMT400031070	Potato	mitochondrion	48.32	50.0
GSMUA_Achr9P01680_001	Banana	cytosol	49.33	49.49
TraesCS5A01G262700.1	Wheat	mitochondrion	52.01	49.36
TraesCS4A01G336100.1	Wheat	nucleus	48.32	48.98
TraesCS5D01G533200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	47.65	48.8
TraesCS5D01G533400.1	Wheat	cytosol	47.99	48.64
TraesCS5B01G535900.1	Wheat	plastid	47.99	48.64
CDY37125	Canola	cytosol	49.33	47.27
TraesCS5D01G533500.1	Wheat	plastid	47.65	47.18
KRG98621	Soybean	nucleus	35.91	47.14
AT1G50590.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	48.99	47.1
CDY22806	Canola	cytosol	48.99	46.95
Bra018859.1-P	Field mustard	cytosol	48.32	46.3
TraesCS4A01G335900.1	Wheat	plastid	42.62	43.2
HORVU5Hr1G120790.2	Barley	cytosol	46.98	42.55
Zm00001d008595_P001	Maize	plastid	45.97	41.39
OQU90634	Sorghum	mitochondrion	48.66	40.62
Os03t0845000-01	Rice	plasma membrane	48.99	40.44
TraesCS4A01G336000.2	Wheat	nucleus	43.29	38.97
TraesCS5B01G535700.3	Wheat	plastid	47.65	38.48
TraesCS5B01G535800.1	Wheat	plastid	47.99	38.44
TraesCS5B01G536000.2	Wheat	plastid	47.65	38.38
TraesCS4A01G336200.2	Wheat	plastid	47.65	38.38
Zm00001d046171_P001	Maize	endoplasmic reticulum, mitochondrion, nucleus, plastid	25.84	38.31
TraesCS5D01G533100.1	Wheat	plastid	47.99	37.93
HORVU5Hr1G120780.3	Barley	plastid	47.65	36.98
Zm00001d034829_P001	Maize	mitochondrion	46.64	36.68
HORVU5Hr1G120810.1	Barley	plastid	30.2	36.14
TraesCS1B01G420000.1	Wheat	plastid	42.62	35.28
TraesCS1A01G391900.1	Wheat	plastid	41.95	34.53
TraesCS1D01G400000.1	Wheat	plastid	40.94	33.89
Os08t0364900-00	Rice	plastid	39.6	33.52
HORVU5Hr1G120800.4	Barley	plastid	47.99	32.21
HORVU1Hr1G086450.3	Barley	endoplasmic reticulum, plastid	40.6	30.4
Zm00001d032363_P001	Maize	cytosol	36.24	28.8
EES14882	Sorghum	cytosol, plastid	35.91	28.31

Protein Annotations

EnsemblPlants:PGSC0003DMT400057126	EnsemblPlantsGene:PGSC0003DMG400022193	EntrezGene:102594317	Gene3D:2.60.120.10	InterPro:IPR014710	InterPro:Pirin
InterPro:Pirin_C_dom	InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	PANTHER:PTHR13903	PANTHER:PTHR13903:SF5
PFAM:PF02678	PFAM:PF05726	PGSC:PGSC0003DMG400022193	PIRSF:PIRSF006232	RefSeq:XP_006346169.1	SUPFAM:SSF51182
UniParc:UPI00029647E0	UniProt:M1C0G5	MapMan:35.1	:	:	:

Description

Pirin [Source:PGSC_GENE;Acc:PGSC0003DMG400022193]

Coordinates

chr7:-:55273306..55276093

Molecular Weight (calculated)

33177.6 Da

IEP (calculated)

6.903

GRAVY (calculated)

-0.306

Length

298 amino acids

Sequence
(BLAST)

001: MSIVREPRSI ARNFLARPQQ EGLGAVVRRS IGRFELRYFD PFIVLDEFSV SAPAGFPDHP HRGFETVTYM LQGAVTHEDF DGHKGTIKAG DLQWMTAGRG
101: VVHSEMPATE GIQKGLQLWI NLSSKNKMIQ PRYQEISSAN IGEATKDGVK VRVIAGEALG IKSTIHTKTP TIYLDFTLKP GSQIQQPIPK SYNSFVYILE
201: GEGIFGQDSR TNSPISSHNL LLLSGFGDGL VAWNKGTKIL RFILVGGEPL GEPIAQLGPF VMNTQEEIDQ TIEDFENYTN GFEKARYWRS QARVELGY

Best Arabidopsis Sequence Match ( AT1G50590.1 )
(BLAST)

001: MPISEKSSAT NTRLVVKKLF ARQLHEGFGA VVRRSIGRFE FRYFDPFLVL DEFSVSAPAG FPDHPHRGFE TVTYMLEGEI LHEDCEGHKG VIREGGLQWM
101: TAGKGIVHSE MPSSNSNGIT HNKGLQLWIN LSSRQKLVEP SYQEIESKDI AETEKDGVRV RVIAGEWNGV KSKICTRTPT MYLDFTLSPG SRISQPIPLH
201: WNAFVYVLQG HGHFGDSKLQ HSAAAAHHLL VLGLGGDMLE AWNGSDSGLP LRFILVAGEP IGEPMVQFGP FVMNTQEEID ETIDDFENFR NGFEKARHWK
301: SQAASALGLF

Arabidopsis Description

Pirin-like protein At1g50590 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPS9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.