Factsheet for HORVU5Hr1G120800.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G098490.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59220.1	HORVU3Hr1G098490.1	AT1G09030.1	17322342

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G533500.1	Wheat	plastid	65.09	96.01
TraesCS5B01G536000.2	Wheat	plastid	69.82	83.78
TraesCS4A01G336200.2	Wheat	plastid	69.59	83.51
HORVU5Hr1G120790.2	Barley	cytosol	61.04	82.37
VIT_05s0094g00610.t01	Wine grape	cytosol	18.24	75.0
Os03t0845000-01	Rice	plasma membrane	59.23	72.85
VIT_05s0062g01190.t01	Wine grape	cytosol, nucleus, peroxisome	47.97	72.45
HORVU5Hr1G120780.3	Barley	plastid	62.61	72.4
PGSC0003DMT400031088	Potato	cytosol	48.2	72.3
Solyc09g098160.2.1	Tomato	mitochondrion	46.85	71.48
Zm00001d008595_P001	Maize	plastid	53.15	71.3
GSMUA_Achr3P02460_001	Banana	cytosol	47.07	70.85
GSMUA_Achr9P01680_001	Banana	cytosol	47.3	70.71
GSMUA_Achr10P...	Banana	cytosol	46.85	69.8
PGSC0003DMT400031070	Potato	mitochondrion	45.27	69.79
HORVU5Hr1G092220.3	Barley	mitochondrion, peroxisome	20.27	69.23
OQU90634	Sorghum	mitochondrion	54.95	68.35
Solyc09g098180.2.1	Tomato	plastid	49.77	66.97
VIT_19s0090g01530.t01	Wine grape	cytosol	44.37	66.11
Zm00001d034829_P001	Maize	mitochondrion	56.31	65.96
VIT_09s0096g00130.t01	Wine grape	cytosol, nucleus, plastid	14.64	65.0
KRH01821	Soybean	plastid	46.17	63.27
PGSC0003DMT400033425	Potato	mitochondrion	41.67	63.14
KRH14295	Soybean	cytosol	42.57	62.79
KRH46866	Soybean	plastid	45.95	62.77
KRH46283	Soybean	mitochondrion	42.12	62.75
Zm00001d009514_P001	Maize	cytosol, endoplasmic reticulum	13.96	62.63
KRH73851	Soybean	cytoskeleton, cytosol, nucleus	42.34	62.46
Bra004746.1-P	Field mustard	plastid	40.99	61.49
CDY55513	Canola	plastid	40.99	61.49
Bra000289.1-P	Field mustard	cytosol	40.77	61.36
KRG98621	Soybean	nucleus	30.86	60.35
HORVU5Hr1G072760.2	Barley	mitochondrion	40.99	60.07
AT3G59220.1	Thale cress	cytosol	38.29	59.23
CDY17721	Canola	mitochondrion	26.13	59.18
CDY17946	Canola	mitochondrion	41.89	58.49
CDX83501	Canola	mitochondrion	41.44	57.5
CDY42802	Canola	mitochondrion	40.99	56.7
CDY22806	Canola	cytosol	39.64	56.59
CDY37125	Canola	cytosol	39.41	56.27
AT3G59260.1	Thale cress	cytosol	34.23	56.09
Bra018859.1-P	Field mustard	cytosol	39.19	55.95
AT1G50590.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	38.96	55.81
Solyc12g014590.1.1	Tomato	mitochondrion	40.77	55.35
CDX67787	Canola	nucleus	33.78	55.35
HORVU5Hr1G120810.1	Barley	plastid	30.86	55.02
CDX98356	Canola	cytosol	32.43	54.55
CDX89016	Canola	nucleus	34.91	53.45
CDY06015	Canola	cytosol	33.78	52.82
CDY06016	Canola	cytosol	31.76	52.81
Bra014547.1-P	Field mustard	nucleus	34.46	52.76
CDY57498	Canola	cytosol	32.88	52.52
CDY00611	Canola	nucleus	34.01	52.25
CDY57499	Canola	cytoskeleton, cytosol, nucleus	35.81	51.46
Bra007437.1-P	Field mustard	cytosol	22.52	51.02
Zm00001d046171_P001	Maize	endoplasmic reticulum, mitochondrion, nucleus, plastid	22.97	50.75
AT2G43120.2	Thale cress	nucleus	41.89	50.0
Bra003367.1-P	Field mustard	cytosol	20.95	48.69
Solyc07g065160.2.1	Tomato	mitochondrion	32.43	48.32
PGSC0003DMT400057126	Potato	cytosol, mitochondrion, nucleus, plastid	32.21	47.99
Bra007438.1-P	Field mustard	cytosol	19.59	47.03
HORVU1Hr1G086450.3	Barley	endoplasmic reticulum, plastid	38.29	42.71
VIT_09s0096g00380.t01	Wine grape	nucleus	9.23	29.29

Protein Annotations

EnsemblPlants:HORVU5Hr1G120800.4	EnsemblPlantsGene:HORVU5Hr1G120800	Gene3D:2.60.120.10	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR014710	InterPro:Pirin_C_dom	InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	PANTHER:PTHR13903
PANTHER:PTHR13903:SF5	PFAM:PF02678	PFAM:PF05726	SEG:seg	SUPFAM:SSF51182	TMHMM:TMhelix
UniParc:UPI000B46152D	UniProt:A0A287SYQ0	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chrchr5H:-:658376806..658378862

Molecular Weight (calculated)

48293.4 Da

IEP (calculated)

10.320

GRAVY (calculated)

-0.349

Length

444 amino acids

Sequence
(BLAST)

001: STPSATSPPP TRSHLSRRPK PQQPHRKSSH ARPSIPAVNA HRQEGRASDL DRHLFTPPHL ASTVTQHLTS PQQRRTEMPA HSAASPIYTA LARLANFNRS
101: RRALLASRKT SSRSSAKAKP FLFLLLILVV VTAVFLFPPA IMSSSSSSSS SAAAAASVPF QSPRKVVKKV LSLSQSEGQG ATVRRSIGGH ELPNLDPFLL
201: LDEFSVSKPA GFPDHPHRGF ETVTYMLDGA FTHQDFSGHK GTIRTGDVQW MTAGRGIVHS EMPAADGVQK GLQLWINLAS KDKMIEPGYQ ELESKDISQA
301: EKDGVAVRII AGEAFGVRSP VYTRTPTMYM DFTMQPGSQL HQPIPEGWNA FVYIIEGEGV FGKEGTAPVS AHHCLVLGAG DGLSVWNRSG APLRFALVAG
401: QPLNEPVVQQ GPFVMNSRAQ IQQAMEDYYY GRNGFEKASQ WSST

Best Arabidopsis Sequence Match ( AT2G43120.2 )
(BLAST)

001: MAHNQFKDSL DPLSSINRHT ESQHQNTSKI RLLPRKATKK KKREEKTTLK YMRAAINRAN SLGGLFSFRF IRNIKSMSSS TSQDFVSRPV IKKVFAKLQK
101: EGDGAVVRRG ISRSEQKLLD PFLMLDEFSV SPPAGFPDHP HRGFETVTYV LEGGITHQDF KGHKGTIYAG DVQWMTAGRG IIHSEMPEEE VNKGLQLWIN
201: LSSNEKMIEP NYQELSHSDI PKAEQNGVEV KVIAGESMGI QSPVYTRTPT MFLDFTLQPG AQIHQNVPES WNAFAYILES GEGGGVFSSS NSSPIPAHSV
301: VVFGPGNDGV SVWNKSSSKQ LRFVLIAGEP IGEPVVQYGP FVMNTQAEID MTIEDYHYGK NGFEMAKYWR SQ

Arabidopsis Description

RmlC-like cupins superfamily protein [Source:TAIR;Acc:AT2G43120]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.