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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • cytosol 2
  • mitochondrion 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, secretory
BaCelLo:secretory
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX67787 Canola nucleus 85.61 83.39
AT3G59260.1 Thale cress cytosol 76.14 74.17
Bra003367.1-P Field mustard cytosol 53.41 73.82
CDY06015 Canola cytosol 72.35 67.25
CDY57498 Canola cytosol 68.94 65.47
CDX89016 Canola nucleus 66.29 60.34
CDY00611 Canola nucleus 65.91 60.21
CDY06016 Canola cytosol 60.61 59.93
CDY55513 Canola plastid 64.39 57.43
CDY57499 Canola cytoskeleton, cytosol, nucleus 66.67 56.96
VIT_05s0094g00610.t01 Wine grape cytosol 23.11 56.48
CDY17946 Canola mitochondrion 65.91 54.72
CDX83501 Canola mitochondrion 66.29 54.69
CDY42802 Canola mitochondrion 66.29 54.52
VIT_05s0062g01190.t01 Wine grape cytosol, nucleus, peroxisome 60.23 54.08
PGSC0003DMT400031088 Potato cytosol 58.71 52.36
Solyc09g098160.2.1 Tomato mitochondrion 54.55 49.48
GSMUA_Achr10P... Banana cytosol 55.68 49.33
PGSC0003DMT400031070 Potato mitochondrion 53.79 49.31
GSMUA_Achr3P02460_001 Banana cytosol 54.17 48.47
TraesCS5B01G535900.1 Wheat plastid 53.79 48.3
TraesCS4A01G336100.1 Wheat nucleus 53.41 47.96
KRH01821 Soybean plastid 58.71 47.84
TraesCS5D01G533400.1 Wheat cytosol 53.03 47.62
GSMUA_Achr9P01680_001 Banana cytosol 53.41 47.47
TraesCS5D01G533200.1 Wheat cytosol, mitochondrion, nucleus, plastid 52.27 47.42
KRH46866 Soybean plastid 58.33 47.38
TraesCS5D01G533500.1 Wheat plastid 53.79 47.18
Solyc09g098180.2.1 Tomato plastid 58.71 46.97
Os09t0484800-01 Rice cytosol, mitochondrion 52.65 46.8
EER96962 Sorghum cytosol 51.89 46.6
GSMUA_Achr3P11020_001 Banana cytosol 53.03 46.51
CDY17721 Canola mitochondrion 34.47 46.43
Zm00001d008595_P001 Maize plastid 56.06 44.71
Zm00001d020915_P002 Maize cytosol 50.0 44.59
TraesCS5B01G261100.1 Wheat mitochondrion 51.14 44.26
TraesCS5D01G270300.1 Wheat cytosol 50.76 44.22
HORVU5Hr1G072760.2 Barley mitochondrion 50.0 43.56
TraesCS4A01G335900.1 Wheat plastid 48.11 43.2
TraesCS5A01G262700.1 Wheat mitochondrion 51.14 42.99
HORVU5Hr1G120790.2 Barley cytosol 53.41 42.86
HORVU5Hr1G092220.3 Barley mitochondrion, peroxisome 20.45 41.54
CDY37125 Canola cytosol 48.48 41.16
CDY22806 Canola cytosol 48.48 41.16
OQU90634 Sorghum mitochondrion 55.3 40.9
Os03t0845000-01 Rice plasma membrane 55.3 40.44
Zm00001d009514_P001 Maize cytosol, endoplasmic reticulum 14.77 39.39
TraesCS5B01G536000.2 Wheat plastid 53.79 38.38
TraesCS4A01G336200.2 Wheat plastid 53.41 38.11
Zm00001d034829_P001 Maize mitochondrion 54.55 37.99
Os08t0364900-00 Rice plastid 50.38 37.78
TraesCS5B01G535800.1 Wheat plastid 53.03 37.63
TraesCS4A01G336000.2 Wheat nucleus 46.97 37.46
TraesCS5B01G535700.3 Wheat plastid 52.27 37.4
TraesCS5D01G533100.1 Wheat plastid 52.65 36.87
HORVU5Hr1G120780.3 Barley plastid 52.27 35.94
TraesCS1B01G420000.1 Wheat plastid 48.86 35.83
TraesCS1D01G400000.1 Wheat plastid 48.11 35.28
TraesCS1A01G391900.1 Wheat plastid 47.73 34.81
Zm00001d046171_P001 Maize endoplasmic reticulum, mitochondrion, nucleus, plastid 25.76 33.83
EES14882 Sorghum cytosol, plastid 46.59 32.54
HORVU5Hr1G120800.4 Barley plastid 54.55 32.43
Zm00001d032363_P001 Maize cytosol 45.83 32.27
HORVU1Hr1G086450.3 Barley endoplasmic reticulum, plastid 48.11 31.91
VIT_09s0096g00130.t01 Wine grape cytosol, nucleus, plastid 11.74 31.0
HORVU5Hr1G120810.1 Barley plastid 25.76 27.31
VIT_09s0096g00380.t01 Wine grape nucleus 4.55 8.57
Protein Annotations
EnsemblPlants:CDX98356EnsemblPlantsGene:GSBRNA2T00105910001Gene3D:2.60.120.10InterPro:IPR014710InterPro:PirinInterPro:Pirin_C_dom
InterPro:Pirin_N_domInterPro:RmlC-like_jellyrollInterPro:RmlC_Cupin_sfPANTHER:PTHR13903PANTHER:PTHR13903:SF5PFAM:PF02678
PFAM:PF05726PIRSF:PIRSF006232ProteinID:CDX98356ProteinID:CDX98356.1SUPFAM:SSF51182UniParc:UPI0004EEB05A
MapMan:35.1:::::
Description
BnaC06g17170D
Coordinates
chrLK031904:+:784405..786046
Molecular Weight (calculated)
29341.0 Da
IEP (calculated)
5.160
GRAVY (calculated)
-0.192
Length
264 amino acids
Sequence
(BLAST)
001: MGTRLIYKID HKLLDPFVSL VEFSVSPPGG FKDHHHRGFE SVTYMLKGGI IYQDFDGHKI TVHEGDVQWM AAGKGIIHSE MPEEQVNNGI QLWINLPSVD
101: KMIDPKALEL SSSEIPRAEE DVVEVKVIAG ESMGVKSPFY TKVPIMFLDI TLKQRAQTHQ TVPESWTAFA YVIDGDDGVF RSSDSYTVQA HTVVVLGKGD
201: GVSVLNTSSF KPLRFLLIAG EPISEPVVQH GPFVMNSQAE IDMTIEDYRS AKNGFEGAKS WRSE
Best Arabidopsis Sequence Match ( AT3G59260.1 )
(BLAST)
001: MKVMVLSLGK ASPSKSDHEL LDPFVSLVEF SVSPPGGFKD HPHRGFESVT YMFQGGIIHQ DCNGNKGTIH EGDVQWMTAG RGIIHSEMPE EQVNKGLQLW
101: INLPSSAKMI EPKNIEISSS EIPSADDYGV EVKVIAGESM GVKSPFYTKT PIMFLDFTLD PKAQTHQAVP ESWTAFAYIV EGDEGVFSSS DSSTVQAHNV
201: VVFGTGDEVS VWNTSNSRPL RFLLIAGEPI GEPVVQHGPF VMNSQDEIEM TIGDYRNGMN GFEMAKHWRS E
Arabidopsis Description
Putative pirin-like protein At3g59260 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX45]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.