Factsheet for TraesCS5A01G262700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G457000.1
TraesCS3D01G450000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59220.1	TraesCS3A01G457000.1	AT1G09030.1	17322342
AT3G59220.1	TraesCS3D01G450000.1	AT1G09030.1	17322342

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G092220.3	Barley	mitochondrion, peroxisome	40.76	98.46
TraesCS5D01G270300.1	Wheat	cytosol	93.63	97.03
TraesCS5B01G261100.1	Wheat	mitochondrion	93.63	96.39
HORVU5Hr1G072760.2	Barley	mitochondrion	91.4	94.72
Os09t0484800-01	Rice	cytosol, mitochondrion	82.17	86.87
EER96962	Sorghum	cytosol	81.21	86.73
Zm00001d020915_P002	Maize	cytosol	80.25	85.14
GSMUA_Achr3P11020_001	Banana	cytosol	72.93	76.08
PGSC0003DMT400033425	Potato	mitochondrion	67.2	72.01
VIT_19s0090g01530.t01	Wine grape	cytosol	67.83	71.48
KRH14295	Soybean	cytosol	67.52	70.43
KRH73851	Soybean	cytoskeleton, cytosol, nucleus	66.88	69.77
KRH46283	Soybean	mitochondrion	64.33	67.79
KRG98621	Soybean	nucleus	46.5	64.32
VIT_05s0062g01190.t01	Wine grape	cytosol, nucleus, peroxisome	60.19	64.29
VIT_05s0094g00610.t01	Wine grape	cytosol	21.97	63.89
PGSC0003DMT400031088	Potato	cytosol	59.87	63.51
AT1G50590.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	62.42	63.23
Solyc12g014590.1.1	Tomato	mitochondrion	65.61	63.0
CDY37125	Canola	cytosol	61.78	62.38
CDY22806	Canola	cytosol	61.47	62.06
Bra000289.1-P	Field mustard	cytosol	58.28	62.03
TraesCS4A01G336100.1	Wheat	nucleus	57.96	61.9
Bra018859.1-P	Field mustard	cytosol	61.15	61.74
Solyc09g098160.2.1	Tomato	mitochondrion	57.01	61.51
PGSC0003DMT400031070	Potato	mitochondrion	56.37	61.46
Bra004746.1-P	Field mustard	plastid	57.01	60.47
CDY55513	Canola	plastid	56.37	59.8
CDX83501	Canola	mitochondrion	58.6	57.5
Solyc09g098180.2.1	Tomato	plastid	59.87	56.97
CDY17946	Canola	mitochondrion	57.64	56.92
CDY42802	Canola	mitochondrion	57.96	56.7
KRH46866	Soybean	plastid	58.6	56.62
KRH01821	Soybean	plastid	57.96	56.17
AT3G59220.1	Thale cress	cytosol	50.0	54.7
CDY17721	Canola	mitochondrion	34.08	54.59
TraesCS4A01G335900.1	Wheat	plastid	50.96	54.42
AT3G59260.1	Thale cress	cytosol	45.86	53.14
VIT_09s0096g00130.t01	Wine grape	cytosol, nucleus, plastid	16.88	53.0
PGSC0003DMT400057126	Potato	cytosol, mitochondrion, nucleus, plastid	49.36	52.01
CDY06015	Canola	cytosol	46.5	51.41
CDX98356	Canola	cytosol	42.99	51.14
CDX89016	Canola	nucleus	47.13	51.03
Solyc07g065160.2.1	Tomato	mitochondrion	48.41	51.01
CDX67787	Canola	nucleus	43.95	50.92
Bra014547.1-P	Field mustard	nucleus	46.18	50.0
CDY57498	Canola	cytosol	43.95	49.64
TraesCS4A01G336000.2	Wheat	nucleus	52.23	49.55
TraesCS4A01G336200.2	Wheat	plastid	57.96	49.19
CDY06016	Canola	cytosol	41.72	49.06
CDY00611	Canola	nucleus	44.59	48.44
AT2G43120.2	Thale cress	nucleus	57.32	48.39
CDY57499	Canola	cytoskeleton, cytosol, nucleus	46.5	47.25
Bra003367.1-P	Field mustard	cytosol	28.34	46.6
Bra007437.1-P	Field mustard	cytosol	28.98	46.43
Bra007438.1-P	Field mustard	cytosol	27.07	45.95
TraesCS1A01G391900.1	Wheat	plastid	50.96	44.2
VIT_09s0096g00380.t01	Wine grape	nucleus	10.51	23.57

Protein Annotations

EnsemblPlants:TraesCS5A01G262700.1	EnsemblPlantsGene:TraesCS5A01G262700	Gene3D:2.60.120.10	InterPro:IPR014710	InterPro:Pirin	InterPro:Pirin_C_dom
InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	PANTHER:PTHR13903	PANTHER:PTHR13903:SF5	PFAM:PF02678
PFAM:PF05726	PIRSF:PIRSF006232	SEG:seg	SUPFAM:SSF51182	MapMan:35.1	:

Description

No Description!

Coordinates

chr5A:+:475749574..475751234

Molecular Weight (calculated)

34622.1 Da

IEP (calculated)

5.799

GRAVY (calculated)

-0.317

Length

314 amino acids

Sequence
(BLAST)

001: MYMSTMEVAK PRQVARRFQA RPQHEGAGAV VRRSIGRFEL RYFDPFLVLD EFSASAPAGF PDHPHRGFET VTYMLEGAVT HEDFEGHRGT IKAGDVQWMT
101: AGRGIVHSEM PAGPGTSKGL QLWVNLASKN KMVEPGYQEF QSKDIASTTS ADGDVTVRVI AGEAMGARSP VRTRTPTMYL DFTVRPHATA PVRQPVPASW
201: NAFVYVLEGE GVFGPMTDQK QQAAQPAGAH HLLLLGQDGD GVEVWNRSDK PLRFVLVAGE PIGEPVAQLG PFVMNTEEEI DATVNDFEYF INGFEKAKHW
301: KSQAMIALEL EYVG

Best Arabidopsis Sequence Match ( AT1G50590.1 )
(BLAST)

001: MPISEKSSAT NTRLVVKKLF ARQLHEGFGA VVRRSIGRFE FRYFDPFLVL DEFSVSAPAG FPDHPHRGFE TVTYMLEGEI LHEDCEGHKG VIREGGLQWM
101: TAGKGIVHSE MPSSNSNGIT HNKGLQLWIN LSSRQKLVEP SYQEIESKDI AETEKDGVRV RVIAGEWNGV KSKICTRTPT MYLDFTLSPG SRISQPIPLH
201: WNAFVYVLQG HGHFGDSKLQ HSAAAAHHLL VLGLGGDMLE AWNGSDSGLP LRFILVAGEP IGEPMVQFGP FVMNTQEEID ETIDDFENFR NGFEKARHWK
301: SQAASALGLF

Arabidopsis Description

Pirin-like protein At1g50590 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPS9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.