Factsheet for Bra014547.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018585.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59220.1	Bra018585.1-P	AT1G09030.1	17322342

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89016	Canola	nucleus	97.24	97.24
Bra007437.1-P	Field mustard	cytosol	55.17	81.63
AT3G59220.1	Thale cress	cytosol	80.69	81.53
Bra000289.1-P	Field mustard	cytosol	65.52	64.41
Bra004746.1-P	Field mustard	plastid	65.52	64.19
Bra003367.1-P	Field mustard	cytosol	41.72	63.35
Bra007438.1-P	Field mustard	cytosol	37.59	58.92
VIT_05s0062g01190.t01	Wine grape	cytosol, nucleus, peroxisome	57.59	56.8
PGSC0003DMT400031088	Potato	cytosol	57.59	56.42
PGSC0003DMT400031070	Potato	mitochondrion	53.79	54.17
Solyc09g098160.2.1	Tomato	mitochondrion	54.14	53.95
HORVU5Hr1G092220.3	Barley	mitochondrion, peroxisome	23.79	53.08
GSMUA_Achr10P...	Banana	cytosol	54.48	53.02
GSMUA_Achr3P02460_001	Banana	cytosol	53.79	52.88
VIT_05s0094g00610.t01	Wine grape	cytosol	19.66	52.78
TraesCS5B01G535900.1	Wheat	plastid	52.76	52.04
GSMUA_Achr9P01680_001	Banana	cytosol	53.1	51.85
TraesCS5D01G533400.1	Wheat	cytosol	52.41	51.7
TraesCS4A01G336100.1	Wheat	nucleus	52.41	51.7
TraesCS5D01G533200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	51.03	50.86
TraesCS5D01G533500.1	Wheat	plastid	52.41	50.5
EER96962	Sorghum	cytosol	51.03	50.34
Solyc09g098180.2.1	Tomato	plastid	57.24	50.3
Os09t0484800-01	Rice	cytosol, mitochondrion	51.03	49.83
KRH01821	Soybean	plastid	55.52	49.69
KRH46866	Soybean	plastid	54.83	48.92
Zm00001d020915_P002	Maize	cytosol	49.66	48.65
GSMUA_Achr3P11020_001	Banana	cytosol	50.0	48.17
HORVU5Hr1G072760.2	Barley	mitochondrion	50.0	47.85
TraesCS5B01G261100.1	Wheat	mitochondrion	50.0	47.54
TraesCS5D01G270300.1	Wheat	cytosol	49.31	47.19
Zm00001d008595_P001	Maize	plastid	52.76	46.22
TraesCS5A01G262700.1	Wheat	mitochondrion	50.0	46.18
TraesCS4A01G335900.1	Wheat	plastid	46.55	45.92
HORVU5Hr1G120790.2	Barley	cytosol	52.07	45.9
Bra018859.1-P	Field mustard	cytosol	47.93	44.69
Zm00001d009514_P001	Maize	cytosol, endoplasmic reticulum	14.83	43.43
OQU90634	Sorghum	mitochondrion	53.45	43.42
Os03t0845000-01	Rice	plasma membrane	52.41	42.11
TraesCS4A01G336000.2	Wheat	nucleus	47.24	41.39
TraesCS5B01G536000.2	Wheat	plastid	52.41	41.08
VIT_09s0096g00130.t01	Wine grape	cytosol, nucleus, plastid	14.14	41.0
TraesCS5B01G535700.3	Wheat	plastid	52.07	40.92
TraesCS4A01G336200.2	Wheat	plastid	51.72	40.54
Zm00001d034829_P001	Maize	mitochondrion	52.41	40.11
TraesCS5B01G535800.1	Wheat	plastid	51.38	40.05
TraesCS5D01G533100.1	Wheat	plastid	51.72	39.79
HORVU5Hr1G120780.3	Barley	plastid	51.72	39.06
TraesCS1B01G420000.1	Wheat	plastid	45.52	36.67
Os08t0364900-00	Rice	plastid	44.48	36.65
TraesCS1D01G400000.1	Wheat	plastid	44.14	35.56
TraesCS1A01G391900.1	Wheat	plastid	44.14	35.36
HORVU5Hr1G120800.4	Barley	plastid	52.76	34.46
Zm00001d046171_P001	Maize	endoplasmic reticulum, mitochondrion, nucleus, plastid	23.79	34.33
HORVU1Hr1G086450.3	Barley	endoplasmic reticulum, plastid	43.45	31.66
EES14882	Sorghum	cytosol, plastid	39.31	30.16
Zm00001d032363_P001	Maize	cytosol	38.97	30.13
HORVU5Hr1G120810.1	Barley	plastid	25.86	30.12
VIT_09s0096g00380.t01	Wine grape	nucleus	8.97	18.57

Protein Annotations

EnsemblPlants:Bra014547.1	EnsemblPlants:Bra014547.1-P	EnsemblPlantsGene:Bra014547	Gene3D:2.60.120.10	InterPro:IPR014710	InterPro:Pirin
InterPro:Pirin_C_dom	InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	PANTHER:PTHR13903	PANTHER:PTHR13903:SF5
PFAM:PF02678	PFAM:PF05726	PIRSF:PIRSF006232	SUPFAM:SSF51182	UniParc:UPI0002543FE5	UniProt:M4DDH9
MapMan:35.1	:	:	:	:	:

Description

AT3G59220 (E=1e-135) PRN, PRN1, ATPIRIN1 | PRN (PIRIN); calmodulin binding

Coordinates

chrA04:-:1347710..1349111

Molecular Weight (calculated)

32040.3 Da

IEP (calculated)

5.047

GRAVY (calculated)

-0.234

Length

290 amino acids

Sequence
(BLAST)

001: MSPSSENNRV TRQVIKSFLV KLQEEGEGAL VRNAITEMDQ KLLDPFVLLV EFSFSLSVGY PDHPHRGFES LTYMLKGGII HKDLKGQKSI IKAGDVQWMT
101: AGRGIIHSEY PEQEVNNGLQ LWINLPSIHR MMEPKNLELS GSEIQRAEED GVEVKVIAGD SMGIKSPSHT TTPMMYLDFT LKPGSQTHQA VPESWTAFAY
201: ILEGDEGVFS SMNSSAISAH HVVVFGPGEL VSVWNKSSSR SLRFLLIAGE PIGEPMVQSG PFVMSSQAEI DMAFEDYQNA KNGFEMAKSS

Best Arabidopsis Sequence Match ( AT3G59220.1 )
(BLAST)

001: MTYENNSVPR IVIKKVLAKL EKEGEGAVVR NGITKIDQKL LDPFVLLVEF SFSLSAGFPD HPHRGFESVT YMLQGGIIHK DPKGHKGTIQ AGDVQWMTAG
101: RGIIHSEFPE EEVNNGLQLW INLPSTEKMT EPKYKELSSL DIPRAEENGV EVKVIAGDSM GIKSPVYTRT PTMFLDFTLK PGSQTHQTVP ESWTAFAYII
201: EGDEGVFGSL NSSAISAHHV VVFGPGDLVS VWNKSTSRSL RFLLIAGEPI GEPVVQCGPF VMNSQAEIDM AFDDYQNAKN GFEMAKC

Arabidopsis Description

PRN1Pirin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX49]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.