Factsheet for TraesCS5D01G533100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, vacuole
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G457000.1
TraesCS3D01G450000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59220.1	TraesCS3A01G457000.1	AT1G09030.1	17322342
AT3G59220.1	TraesCS3D01G450000.1	AT1G09030.1	17322342

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G533500.1	Wheat	plastid	73.21	91.69
TraesCS5D01G533400.1	Wheat	cytosol	71.09	91.16
TraesCS5D01G533200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	69.76	90.38
TraesCS5B01G535800.1	Wheat	plastid	87.8	88.98
TraesCS4A01G335900.1	Wheat	plastid	68.17	87.42
HORVU5Hr1G120790.2	Barley	cytosol	71.35	81.76
HORVU5Hr1G120780.3	Barley	plastid	75.86	74.48
VIT_05s0094g00610.t01	Wine grape	cytosol	20.95	73.15
PGSC0003DMT400031088	Potato	cytosol	56.23	71.62
VIT_05s0062g01190.t01	Wine grape	cytosol, nucleus, peroxisome	55.44	71.09
Solyc09g098160.2.1	Tomato	mitochondrion	54.64	70.79
Os03t0845000-01	Rice	plasma membrane	67.37	70.36
GSMUA_Achr3P02460_001	Banana	cytosol	54.91	70.17
Zm00001d008595_P001	Maize	plastid	61.27	69.79
GSMUA_Achr9P01680_001	Banana	cytosol	54.91	69.7
GSMUA_Achr10P...	Banana	cytosol	54.91	69.46
PGSC0003DMT400031070	Potato	mitochondrion	52.79	69.1
OQU90634	Sorghum	mitochondrion	64.46	68.07
Solyc09g098180.2.1	Tomato	plastid	57.03	65.15
VIT_09s0096g00130.t01	Wine grape	cytosol, nucleus, plastid	17.24	65.0
VIT_19s0090g01530.t01	Wine grape	cytosol	51.19	64.77
Zm00001d034829_P001	Maize	mitochondrion	64.72	64.38
KRH01821	Soybean	plastid	54.64	63.58
KRH46866	Soybean	plastid	54.38	63.08
CDY55513	Canola	plastid	48.28	61.49
Bra004746.1-P	Field mustard	plastid	48.28	61.49
PGSC0003DMT400033425	Potato	mitochondrion	47.75	61.43
KRH14295	Soybean	cytosol	48.54	60.8
KRH73851	Soybean	cytoskeleton, cytosol, nucleus	48.54	60.8
CDY17721	Canola	mitochondrion	31.57	60.71
Bra000289.1-P	Field mustard	cytosol	47.48	60.68
Zm00001d009514_P001	Maize	cytosol, endoplasmic reticulum	15.92	60.61
KRH46283	Soybean	mitochondrion	47.48	60.07
TraesCS5D01G270300.1	Wheat	cytosol	47.75	59.41
CDY17946	Canola	mitochondrion	49.34	58.49
AT3G59220.1	Thale cress	cytosol	44.03	57.84
CDX83501	Canola	mitochondrion	49.07	57.81
KRG98621	Soybean	nucleus	34.75	57.71
CDY42802	Canola	mitochondrion	48.28	56.7
CDY22806	Canola	cytosol	46.15	55.95
CDY37125	Canola	cytosol	45.89	55.63
AT1G50590.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	45.62	55.48
Bra018859.1-P	Field mustard	cytosol	45.62	55.31
AT3G59260.1	Thale cress	cytosol	39.26	54.61
Solyc12g014590.1.1	Tomato	mitochondrion	46.95	54.13
CDX67787	Canola	nucleus	38.73	53.87
CDX98356	Canola	cytosol	36.87	52.65
CDY06015	Canola	cytosol	39.26	52.11
CDX89016	Canola	nucleus	40.05	52.07
CDY57498	Canola	cytosol	38.2	51.8
Bra014547.1-P	Field mustard	nucleus	39.79	51.72
CDY06016	Canola	cytosol	36.6	51.69
CDY00611	Canola	nucleus	38.73	50.52
AT2G43120.2	Thale cress	nucleus	49.6	50.27
CDY57499	Canola	cytoskeleton, cytosol, nucleus	41.11	50.16
Zm00001d046171_P001	Maize	endoplasmic reticulum, mitochondrion, nucleus, plastid	26.53	49.75
Bra007437.1-P	Field mustard	cytosol	25.73	49.49
Solyc07g065160.2.1	Tomato	mitochondrion	38.2	48.32
PGSC0003DMT400057126	Potato	cytosol, mitochondrion, nucleus, plastid	37.93	47.99
TraesCS1D01G400000.1	Wheat	plastid	44.83	46.94
Bra003367.1-P	Field mustard	cytosol	23.61	46.6
Bra007438.1-P	Field mustard	cytosol	22.55	45.95
VIT_09s0096g00380.t01	Wine grape	nucleus	11.94	32.14

Protein Annotations

EnsemblPlants:TraesCS5D01G533100.1	EnsemblPlantsGene:TraesCS5D01G533100	Gene3D:2.60.120.10	InterPro:IPR014710	InterPro:Pirin	InterPro:Pirin_C_dom
InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	PANTHER:PTHR13903	PANTHER:PTHR13903:SF5	PFAM:PF02678
PFAM:PF05726	PIRSF:PIRSF006232	SEG:seg	SUPFAM:SSF51182	TMHMM:TMhelix	MapMan:35.1

Description

No Description!

Coordinates

chr5D:-:547839917..547841476

Molecular Weight (calculated)

41314.5 Da

IEP (calculated)

10.400

GRAVY (calculated)

-0.218

Length

377 amino acids

Sequence
(BLAST)

001: MLRQLLPHFS SSSSSSSPIY SLARLTRQSS SRRVPLASRK TSSSSRSSAS TRPFLCLALF LLLILVVTAL FLFPPAIMSS SSSSSSSAAS VPFERPRKVV
101: KKVLSLSQSE GDGATVRRSI GRHEVPNLDP FLLLDEFSVS KPAGFPDHPH RGFETVTYML DGAFTHQDFS GRKGTIRTGD VQWMTAGRGI VHSEMPASNG
201: VQKGLQLWIN LASKDKMIKP RYQELESKDI SQAEKHGVKV RIIAGEAFGV RSPVYTRTPT MYMDFTMQPG SQLHQPIPEG WNAFVYIIEG EGVFGREGAA
301: PASAHHCLVL GAGDGLSVWK RSGAPLRFVL AAGQPLNELV VQQGPFVMNS RAQIKKAMED YYYGRNGFEK ASQWSST

Best Arabidopsis Sequence Match ( AT1G50590.1 )
(BLAST)

001: MPISEKSSAT NTRLVVKKLF ARQLHEGFGA VVRRSIGRFE FRYFDPFLVL DEFSVSAPAG FPDHPHRGFE TVTYMLEGEI LHEDCEGHKG VIREGGLQWM
101: TAGKGIVHSE MPSSNSNGIT HNKGLQLWIN LSSRQKLVEP SYQEIESKDI AETEKDGVRV RVIAGEWNGV KSKICTRTPT MYLDFTLSPG SRISQPIPLH
201: WNAFVYVLQG HGHFGDSKLQ HSAAAAHHLL VLGLGGDMLE AWNGSDSGLP LRFILVAGEP IGEPMVQFGP FVMNTQEEID ETIDDFENFR NGFEKARHWK
301: SQAASALGLF

Arabidopsis Description

Pirin-like protein At1g50590 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPS9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.