Factsheet for Bra030070.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000462.1-P
Bra001815.1-P
Bra004428.1-P
Bra018046.1-P
Bra031255.1-P
Bra038636.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28050.1	Bra000462.1-P	AT2G47810.1	17138697
AT1G28050.1	Bra004428.1-P	AT2G47810.1	17138697
AT1G28050.1	Bra001815.1-P	AT3G21150.1	21798944
AT1G28050.1	Bra031255.1-P	AT3G21150.1	21798944
AT1G28050.1	Bra018046.1-P	AT5G63470.1	17138697
AT1G28050.1	Bra038636.1-P	AT5G63470.1	17138697

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15696	Canola	nucleus	93.51	99.65
Bra010908.1-P	Field mustard	nucleus	78.57	57.89
Bra041077.1-P	Field mustard	nucleus	75.32	56.86
AT1G28050.1	Thale cress	nucleus	73.7	52.42
VIT_01s0146g00360.t01	Wine grape	nucleus	54.55	35.82
Solyc05g024010.2.1	Tomato	nucleus	51.62	35.18
PGSC0003DMT400065377	Potato	nucleus	51.3	34.88
Bra004423.1-P	Field mustard	nucleus	34.42	31.74
VIT_14s0068g01380.t01	Wine grape	nucleus	45.13	30.96
KRG94656	Soybean	nucleus	37.99	30.39
KRH06865	Soybean	nucleus	37.34	30.18
GSMUA_Achr10P...	Banana	nucleus	40.26	27.07
Os09t0509700-01	Rice	nucleus	37.01	26.45
GSMUA_Achr6P06130_001	Banana	nucleus	37.99	26.29
Bra032061.1-P	Field mustard	nucleus	24.03	25.61
EES14176	Sorghum	nucleus	39.29	24.69
TraesCS7B01G161500.1	Wheat	nucleus	38.96	24.59
TraesCS7D01G264300.1	Wheat	nucleus	38.96	24.54
TraesCS7A01G263500.1	Wheat	nucleus	38.64	24.29
GSMUA_Achr11P...	Banana	nucleus	40.26	23.94
Bra020709.1-P	Field mustard	nucleus	26.95	23.65
Bra001264.1-P	Field mustard	nucleus	26.95	23.65
Zm00001d031662_P001	Maize	nucleus	37.01	23.31
Bra040020.1-P	Field mustard	nucleus	27.6	23.22
Bra029666.1-P	Field mustard	nucleus	28.57	22.8
Bra023541.1-P	Field mustard	nucleus	23.05	22.54
Bra037499.1-P	Field mustard	nucleus	25.0	22.32
Bra036528.1-P	Field mustard	nucleus	22.73	20.29
Bra009805.1-P	Field mustard	nucleus	23.05	20.23
Bra008668.1-P	Field mustard	nucleus	21.75	19.88
Bra023858.1-P	Field mustard	nucleus	24.35	19.43
Bra008669.1-P	Field mustard	nucleus	22.08	18.58
Bra020425.1-P	Field mustard	nucleus, plastid	20.45	18.42
Bra021464.1-P	Field mustard	nucleus	19.16	18.38
HORVU0Hr1G021050.5	Barley	cytosol	22.4	16.31
Bra001043.1-P	Field mustard	nucleus	12.01	16.23
Bra002709.1-P	Field mustard	nucleus	9.74	13.76

Protein Annotations

MapMan:15.5.1.2	EnsemblPlantsGene:Bra030070	EnsemblPlants:Bra030070.1	EnsemblPlants:Bra030070.1-P	InterPro:CCT_domain	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008270	GO:GO:0046872	InterPro:IPR000315	InterPro:IPR010402	UniProt:M4EMQ0	PFAM:PF00643
PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31717	PANTHER:PTHR31717:SF20	SMART:SM00336
UniParc:UPI0002541133	InterPro:Znf_B-box	SEG:seg	:	:	:

Description

AT1G28050 (E=4e-080) | zinc finger (B-box type) family protein

Coordinates

chrA07:+:6822545..6823634

Molecular Weight (calculated)

34027.9 Da

IEP (calculated)

5.996

GRAVY (calculated)

-0.632

Length

308 amino acids

Sequence
(BLAST)

001: MSSSERHPCE FCGERAAVLF CRADTAKLCL PCDQHVHTAN LLSKKHVRSQ ICDNCGNEPV SVRCFTDNLV LCQDCDWDVH GSCSVSDAHV RSALEGFSGC
101: PSALELAALL GVDLGGRKEE NEGPTMESFG MQLDSWVTGS NVLQELVVPV PKETTSFRKR GSSCCGRYKQ VLCKQLEELF NNGDNDGDGE GEGGGEAREG
201: LMVPEMPERM GRARDAEEIN SGGEVIQQPP TTSFTSLLLN ADNPSASSAG RTTQIWDFNR DNAMQRYKEK RKTRRYDKTI RYESRKATAD TRLRVKGRFV
301: KATEAPYP

Best Arabidopsis Sequence Match ( AT1G28050.1 )
(BLAST)

001: MSSSERVPCD FCGERTAVLF CRADTAKLCL PCDQQVHTAN LLSRKHVRSQ ICDNCGNEPV SVRCFTDNLI LCQECDWDVH GSCSVSDAHV RSAVEGFSGC
101: PSALELAALW GLDLEQGRKD EENQVPMMAM MMDNFGMQLD SWVLGSNELI VPSDTTFKKR GSCGSSCGRY KQVLCKQLEE LLKSGVVGGD GDDGDRDRDC
201: DREGACDGDG DGEAGEGLMV PEMSERLKWS RDVEEINGGG GGGVNQQWNA TTTNPSGGQS SQIWDFNLGQ SRGPEDTSRV EAAYVGKGAA SSFTINNFVD
301: HMNETCSTNV KGVKEIKKDD YKRSTSGQVQ PTKSESNNRP ITFGSEKGSN SSSDLHFTEH IAGTSCKTTR LVATKADLER LAQNRGDAMQ RYKEKRKTRR
401: YDKTIRYESR KARADTRLRV RGRFVKASEA PYP

Arabidopsis Description

COL15Zinc finger protein CONSTANS-LIKE 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7E8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.