Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80141 | Canola | nucleus | 98.5 | 99.1 |
| AT2G47890.1 | Thale cress | nucleus | 69.16 | 69.58 |
| KRH68113 | Soybean | nucleus | 46.11 | 44.13 |
| KRG96381 | Soybean | nucleus | 46.11 | 43.87 |
| Solyc09g074560.2.1 | Tomato | nucleus | 48.2 | 43.16 |
| PGSC0003DMT400029591 | Potato | nucleus | 48.5 | 42.74 |
| VIT_07s0104g01360.t01 | Wine grape | nucleus | 49.7 | 42.13 |
| KRH71535 | Soybean | nucleus | 42.52 | 41.76 |
| KRH31920 | Soybean | nucleus | 43.11 | 41.38 |
| GSMUA_Achr6P13590_001 | Banana | cytosol, mitochondrion, nucleus | 9.58 | 35.96 |
| Bra030070.1-P | Field mustard | nucleus | 31.74 | 34.42 |
| GSMUA_Achr3P08880_001 | Banana | nucleus | 33.23 | 27.21 |
| Os07t0667300-01 | Rice | nucleus | 30.84 | 27.11 |
| Bra041077.1-P | Field mustard | nucleus | 32.34 | 26.47 |
| Zm00001d029149_P001 | Maize | nucleus | 31.14 | 26.2 |
| TraesCS2D01G121400.1 | Wheat | nucleus | 29.64 | 25.98 |
| Bra032061.1-P | Field mustard | nucleus | 22.46 | 25.95 |
| EER94860 | Sorghum | nucleus | 32.04 | 25.91 |
| Bra010908.1-P | Field mustard | nucleus | 32.34 | 25.84 |
| TraesCS2B01G140300.1 | Wheat | nucleus | 29.64 | 25.58 |
| Os03t0351100-01 | Rice | nucleus | 30.84 | 25.56 |
| TraesCS2A01G119600.1 | Wheat | nucleus | 29.04 | 25.39 |
| Zm00001d007107_P001 | Maize | nucleus | 30.84 | 25.18 |
| EER99873 | Sorghum | nucleus | 30.54 | 24.7 |
| TraesCS4D01G167300.1 | Wheat | nucleus | 29.04 | 24.43 |
| TraesCS4B01G155800.1 | Wheat | nucleus | 28.74 | 24.18 |
| TraesCS4A01G140600.1 | Wheat | nucleus | 29.34 | 23.79 |
| Bra023541.1-P | Field mustard | nucleus | 22.16 | 23.49 |
| Bra008668.1-P | Field mustard | nucleus | 22.46 | 22.26 |
| Bra021464.1-P | Field mustard | nucleus | 20.96 | 21.81 |
| Bra020709.1-P | Field mustard | nucleus | 22.75 | 21.65 |
| Bra001264.1-P | Field mustard | nucleus | 22.16 | 21.08 |
| Zm00001d022500_P001 | Maize | nucleus | 11.38 | 20.99 |
| Bra008669.1-P | Field mustard | nucleus | 22.75 | 20.77 |
| HORVU4Hr1G048700.1 | Barley | nucleus, plastid | 28.74 | 20.6 |
| Bra036528.1-P | Field mustard | nucleus | 21.26 | 20.58 |
| Bra037499.1-P | Field mustard | nucleus | 20.96 | 20.29 |
| Bra023858.1-P | Field mustard | nucleus | 23.05 | 19.95 |
| Bra040020.1-P | Field mustard | nucleus | 21.86 | 19.95 |
| Bra009805.1-P | Field mustard | nucleus | 20.96 | 19.94 |
| Bra020425.1-P | Field mustard | nucleus, plastid | 20.36 | 19.88 |
| Bra029666.1-P | Field mustard | nucleus | 22.16 | 19.17 |
| Bra001043.1-P | Field mustard | nucleus | 11.98 | 17.54 |
| HORVU2Hr1G020760.2 | Barley | cytosol, mitochondrion | 17.66 | 14.86 |
| Bra002709.1-P | Field mustard | nucleus | 9.28 | 14.22 |
Protein Annotations
| MapMan:15.5.1.2 | EnsemblPlantsGene:Bra004423 | EnsemblPlants:Bra004423.1 | EnsemblPlants:Bra004423.1-P | InterPro:CCT_domain | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008270 | GO:GO:0043565 | GO:GO:0044212 | InterPro:IPR000315 |
| InterPro:IPR010402 | UniProt:M4CJN9 | PFAM:PF06203 | PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31717 |
| PANTHER:PTHR31717:SF16 | SMART:SM00336 | UniParc:UPI0002547FC6 | InterPro:Znf_B-box | SEG:seg | : |
Description
AT2G47890 (E=6e-097) | zinc finger (B-box type) family protein
Coordinates
chrA05:-:64569..65827
Molecular Weight (calculated)
37893.0 Da
IEP (calculated)
6.227
GRAVY (calculated)
-0.772
Length
334 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKEEEEGSH QQHRICDYCE SSVALVYCKA DSAKLCLACD NQVHVTNQLF SKHFRSLLCD SCDDSPSSVF CDTESSVLCQ NCDWQHHTSA SSLHSRRPLE
101: GFSGCPSVTE LLALVGLDDL TDKALFLPHP GGGSEQTLPQ IVSLNDLVAS DGSSHNYRAM DVPPLPKNRH ATCGRHKEEM IRQLRELSRS EPSCLKYETL
201: DNDAELDTTG FLFLEPGNDL FSSTFESQVS GLKWFEDQQE DYYPYSDDNN VNQRGCCTHQ QQEQESSPVM VPVSTSTTTR LTHEINSLER NSALSRYKAK
301: KKSRRYEKHI RYESRKVRAE TRTRIRGRFA KSHP
101: GFSGCPSVTE LLALVGLDDL TDKALFLPHP GGGSEQTLPQ IVSLNDLVAS DGSSHNYRAM DVPPLPKNRH ATCGRHKEEM IRQLRELSRS EPSCLKYETL
201: DNDAELDTTG FLFLEPGNDL FSSTFESQVS GLKWFEDQQE DYYPYSDDNN VNQRGCCTHQ QQEQESSPVM VPVSTSTTTR LTHEINSLER NSALSRYKAK
301: KKSRRYEKHI RYESRKVRAE TRTRIRGRFA KSHP
001: MEAEEGHQRD RLCDYCDSSV ALVYCKADSA KLCLACDKQV HVANQLFAKH FRSLLCDSCN ESPSSLFCET ERSVLCQNCD WQHHTASSSL HSRRPFEGFT
101: GCPSVPELLA IVGLDDLTLD SGLLWESPEI VSLNDLIVSG GSGTHNFRAT DVPPLPKNRH ATCGKYKDEM IRQLRGLSRS EPGCLKFETP DAEIDAGFQF
201: LAPDLFSTCE LESGLKWFDQ QDHEDFPYCS LLKNLSESDE KPENVDRESS VMVPVSGCLN RCEEETVMVP VITSTRSMTH EINSLERNSA LSRYKEKKKS
301: RRYEKHIRYE SRKVRAESRT RIRGRFAKAA DP
101: GCPSVPELLA IVGLDDLTLD SGLLWESPEI VSLNDLIVSG GSGTHNFRAT DVPPLPKNRH ATCGKYKDEM IRQLRGLSRS EPGCLKFETP DAEIDAGFQF
201: LAPDLFSTCE LESGLKWFDQ QDHEDFPYCS LLKNLSESDE KPENVDRESS VMVPVSGCLN RCEEETVMVP VITSTRSMTH EINSLERNSA LSRYKEKKKS
301: RRYEKHIRYE SRKVRAESRT RIRGRFAKAA DP
Arabidopsis Description
COL13Zinc finger protein CONSTANS-LIKE 13 [Source:UniProtKB/Swiss-Prot;Acc:O82256]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.