Factsheet for Bra023541.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005541.1-P
Bra006246.1-P
Bra006326.1-P
Bra008668.1-P
Bra023453.1-P
Bra023541.1-P
Bra035252.1-P
Bra038098.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15850.1	Bra038098.1-P	AT1G53090.1	16854975
AT5G15850.1	Bra038098.1-P	AT1G53090.1	18812498
AT5G15850.1	Bra005541.1-P	AT2G32950.1	18812498
AT5G15850.1	Bra035252.1-P	AT4G11110.1	16854975
AT5G15850.1	Bra006246.1-P	AT5G14250.1	18812498
AT5G15850.1	Bra006326.1-P	AT5G14250.1	18812498
AT5G15850.1	Bra023453.1-P	AT5G14250.1	18812498
AT5G15850.1	Bra008668.1-P	AT5G15850.1	18812498
AT5G15850.1	Bra023541.1-P	AT5G15850.1	18812498

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85529	Canola	nucleus	99.37	98.74
Bra008668.1-P	Field mustard	nucleus	78.41	73.29
AT5G15850.1	Thale cress	nucleus	72.38	64.23
Bra021464.1-P	Field mustard	nucleus	57.46	56.39
Solyc02g089500.2.1	Tomato	nucleus	23.17	51.41
Bra001043.1-P	Field mustard	nucleus	35.56	49.12
KRH18308	Soybean	nucleus	54.29	47.37
KRH45169	Soybean	nucleus	51.11	46.26
KRG93763	Soybean	nucleus	53.33	45.9
VIT_14s0083g00640.t01	Wine grape	nucleus	56.83	45.78
KRH01455	Soybean	nucleus	50.79	45.45
Bra008669.1-P	Field mustard	nucleus	52.7	45.36
GSMUA_Achr4P18680_001	Banana	nucleus	12.38	44.32
Bra032061.1-P	Field mustard	nucleus	40.0	43.6
PGSC0003DMT400026065	Potato	nucleus	55.56	42.37
PGSC0003DMT400026068	Potato	nucleus	52.38	40.74
Bra036528.1-P	Field mustard	nucleus	40.95	37.39
Bra009805.1-P	Field mustard	nucleus	40.63	36.47
GSMUA_Achr9P22690_001	Banana	nucleus, plastid	31.75	34.36
GSMUA_Achr3P28130_001	Banana	nucleus	30.48	34.29
Bra020425.1-P	Field mustard	nucleus, plastid	37.14	34.21
Bra002709.1-P	Field mustard	nucleus	18.73	27.06
Bra030070.1-P	Field mustard	nucleus	22.54	23.05
Bra001264.1-P	Field mustard	nucleus	25.4	22.79
Bra004423.1-P	Field mustard	nucleus	23.49	22.16
Bra020709.1-P	Field mustard	nucleus	24.13	21.65
Bra040020.1-P	Field mustard	nucleus	24.13	20.77
Bra029666.1-P	Field mustard	nucleus	25.08	20.47
Bra037499.1-P	Field mustard	nucleus	21.59	19.71
HORVU0Hr1G022380.1	Barley	cytosol	16.19	17.96
Bra041077.1-P	Field mustard	nucleus	23.17	17.89
Bra023858.1-P	Field mustard	nucleus	21.59	17.62
Bra010908.1-P	Field mustard	nucleus	23.17	17.46

Protein Annotations

MapMan:15.5.1.2	EnsemblPlantsGene:Bra023541	EnsemblPlants:Bra023541.1	EnsemblPlants:Bra023541.1-P	InterPro:CCT_domain	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402	UniProt:M4E438	PFAM:PF00643	PFAM:PF06203
PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31319	PANTHER:PTHR31319:SF39	SMART:SM00336	UniParc:UPI00025436C1
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

AT5G15850 (E=6e-052) COL1, ATCOL1 | COL1 (constans-like 1); transcription factor/ zinc ion binding

Coordinates

chrA02:-:3857291..3858238

Molecular Weight (calculated)

35251.5 Da

IEP (calculated)

7.461

GRAVY (calculated)

-0.561

Length

315 amino acids

Sequence
(BLAST)

001: MLKQDRNWTQ VCNTCRSAAC TVYCRADSAY LCATCDAQVH AANLLASRHE RVRVCEACER APAAFFCKAD AASLCIACDS QIHLVNPLAR RHQRVPILPI
101: SSMATNHSSE TTAMTGPENI VVMGQEEEDE TEVASWLLPS SEKNSGNNNN SLDLVDYQQD YNVPRSRYAR DGVVPLQVEE SKAHMHHEQH NFQFGFTNVS
201: SGCHMVSLVP ESTTSDTTVL LHSPSPKAAT DQLPDPSTQI LSPGEREARV MRYREKKKTR KFEKRVRYAS RKAYAETRPR IKGRFVKREE VDAEADQGFS
301: TMTMFNTGYG VVPSL

Best Arabidopsis Sequence Match ( AT5G15850.1 )
(BLAST)

001: MLKVESNWAQ ACDTCRSAAC TVYCRADSAY LCSSCDAQVH AANRLASRHE RVRVCQSCER APAAFFCKAD AASLCTTCDS EIHSANPLAR RHQRVPILPI
101: SEYSYSSTAT NHSCETTVTD PENRLVLGQE EEDEDEAEAA SWLLPNSGKN SGNNNGFSIG DEFLNLVDYS SSDKQFTDQS NQYQLDCNVP QRSYGEDGVV
201: PLQIEVSKGM YQEQQNFQLS INCGSWGALR SSNGSLSHMV NVSSMDLGVV PESTTSDATV SNPRSPKAVT DQPPYPPAQM LSPRDREARV LRYREKKKMR
301: KFEKTIRYAS RKAYAEKRPR IKGRFAKKKD VDEEANQAFS TMITFDTGYG IVPSF

Arabidopsis Description

COL1Zinc finger protein CONSTANS-LIKE 1 [Source:UniProtKB/Swiss-Prot;Acc:O50055]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.